BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:166.4 nTPM
HPA Brain:511.9 nTPM
GTEx:166.4 nTPM
FANTOM5:625.8 Scaled Tags Per Million
Macaque:207.0 nTPM
Mouse:63.1 nTPM
Rat:57.9 nTPM
Pig:91.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 511.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 345.9
1830 Male, age 51, unknown 471.7
2019 Male, age 18, unknown 456.4
1833 Male, age 53, unknown 436.4
2411 Female, age 72, unknown 410.4
1870 Female, age 42, unknown 400.4
2666 Male, age 74, left hemisphere 310.9
2828 Female, age 72, unknown 285.2
1827 Male, age 72, unknown 237.9
2219 Male, age 76, both hemispheres 225.5
2586 Male, age 75, left hemisphere 224.0
Dorsal raphe nucleus
nTPM: 247.6
2750 Male, age 76, both hemispheres 458.0
2016 Female, age 72, unknown 257.2
1828 Male, age 53, unknown 235.5
2047 Male, age 72, unknown 151.9
2298 Female, age 72, unknown 135.6
Inferior colliculus
nTPM: 231.9
1890 Male, age 53, unknown 248.3
1848 Female, age 42, unknown 240.1
2849 Male, age 72, unknown 239.3
2097 Female, age 72, unknown 199.7
Median raphe nucleus
nTPM: 212.5
2220 Male, age 76, midline 212.5
Periaquaductal grey, anterior
nTPM: 201.3
2502 Female, age 75, unknown 244.4
1947 Male, age 18, unknown 213.5
1795 Male, age 51, unknown 145.9
Periaquaductal grey, dorsal
nTPM: 162.8
2464 Female, age 72, unknown 265.7
1831 Male, age 72, unknown 173.0
2850 Male, age 76, both hemispheres 112.3
1840 Male, age 53, unknown 100.1
Periaquaductal grey, lateral
nTPM: 176.9
2272 Male, age 74, both hemispheres 221.4
2053 Male, age 18, unknown 197.6
2140 Male, age 76, both hemispheres 111.7
Pretectal area
nTPM: 232.9
2316 Male, age 76, right hemisphere 369.4
1815 Male, age 53, unknown 342.2
1817 Female, age 42, unknown 300.5
2007 Male, age 72, unknown 278.6
2825 Male, age 18, unknown 218.5
2407 Male, age 75, both hemispheres 218.0
2273 Male, age 74, both hemispheres 183.1
2224 Female, age 72, unknown 170.8
1944 Female, age 72, unknown 167.9
2667 Female, age 75, unknown 156.8
1816 Male, age 51, unknown 155.9
Red nucleus
nTPM: 511.9
1821 Female, age 72, unknown 683.3
1865 Male, age 51, unknown 674.5
2823 Male, age 76, right hemisphere 605.4
1904 Male, age 53, unknown 594.8
2503 Female, age 72, unknown 523.1
1954 Female, age 42, unknown 501.8
2785 Male, age 18, unknown 473.3
2227 Male, age 72, unknown 467.0
2769 Male, age 72, unknown 458.8
2588 Male, age 74, left hemisphere 436.3
2725 Female, age 75, unknown 431.6
2584 Male, age 75, left hemisphere 293.3
Substantia nigra
nTPM: 288.3
2409 Female, age 72, unknown 427.1
1889 Female, age 72, unknown 327.1
1851 Male, age 51, unknown 322.2
2590 Female, age 75, unknown 311.1
2241 Male, age 72, unknown 309.3
2699 Male, age 18, unknown 283.8
2583 Male, age 75, right hemisphere 257.1
1941 Male, age 53, unknown 237.6
2665 Male, age 74, both hemispheres 208.1
1916 Female, age 42, unknown 199.2
Superior colliculus
nTPM: 305.2
1895 Male, age 76, right hemisphere 502.3
1995 Male, age 72, unknown 417.2
1913 Female, age 42, unknown 414.0
2668 Female, age 75, unknown 338.9
2587 Male, age 74, left hemisphere 326.2
1839 Male, age 51, unknown 324.0
1796 Male, age 53, unknown 215.1
2087 Female, age 72, unknown 178.3
2261 Male, age 18, unknown 174.0
2664 Male, age 75, both hemispheres 161.8
Ventral tegmental area
nTPM: 294.1
2223 Female, age 72, unknown 408.4
2410 Female, age 72, unknown 389.4
2218 Male, age 76, both hemispheres 251.3
1915 Female, age 42, unknown 249.8
2021 Male, age 53, unknown 247.1
1942 Male, age 51, unknown 218.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 166.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 166.4
Samples: 183

Max nTPM: 527.9
Min nTPM: 21.5
Std nTPM: 83.6
Median nTPM: 140.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 527.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 448.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 433.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 404.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 402.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 362.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 362.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 356.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 332.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 321.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 321.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 625.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 625.8
FF:10158-103A5 76 years, female 625.8

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 207.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 207.0
Samples: 1

Max nTPM: 207.0
Min nTPM: 207.0
Sample A 207.0
Midbrain
nTPM: 101.3
Samples: 1

Max nTPM: 101.3
Min nTPM: 101.3
Sample A 101.3
Superior colliculi
nTPM: 165.5
Samples: 1

Max nTPM: 165.5
Min nTPM: 165.5
Sample A 165.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 91.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.8
Samples: 3

Max nTPM: 106.8
Min nTPM: 64.2
Sample A Female 106.8
Sample B Female 64.2
Sample C Male 80.5
Midbrain
nTPM: 83.1
Samples: 3

Max nTPM: 109.8
Min nTPM: 68.5
Sample B Female 109.8
Sample C Male 70.9
Sample D Male 68.5
Periaqueductal gray
nTPM: 73.7
Samples: 3

Max nTPM: 90.2
Min nTPM: 56.5
Sample B Female 90.2
Sample C Male 56.5
Sample D Male 74.3
Superior colliculi
nTPM: 91.3
Samples: 4

Max nTPM: 115.0
Min nTPM: 47.8
Sample A Female 100.9
Sample B Female 47.8
Sample C Male 101.6
Sample D Male 115.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 63.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.1
Samples: 4

Max nTPM: 68.2
Min nTPM: 58.8
Sample A 60.1
Sample B 58.8
Sample C 68.2
Sample D 65.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 57.9
Rat sample Sample description nTPM
Midbrain
nTPM: 57.8
Samples: 4

Max nTPM: 59.6
Min nTPM: 56.3
Sample A 59.6
Sample A 57.0
Sample A 56.3
Sample A 58.5

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