A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
133.4
nTPM
Monaco:
186.9
nTPM
Schmiedel:
92.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
133.4
HPA sample
nTPM
Classical monocyte nTPM: 133.5
Samples: 6
Max nTPM: 150.9
Min nTPM: 119.7
P10809_1003
119.7
P10809_1020
136.3
P10809_1039
145.0
P10809_1058
126.9
P10809_1080
121.9
P10809_1107
150.9
Intermediate monocyte nTPM: 106.1
Samples: 6
Max nTPM: 153.4
Min nTPM: 87.2
P10809_1004
87.2
P10809_1023
108.6
P10809_1042
153.4
P10809_1061
89.9
P10809_1081
92.9
P10809_1108
104.3
Non-classical monocyte nTPM: 122.0
Samples: 5
Max nTPM: 155.6
Min nTPM: 97.9
P10809_1005
97.9
P10809_1053
155.6
P10809_1072
142.5
P10809_1082
99.3
P10809_1109
114.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
186.9
Monaco sample
nTPM
Classical monocyte nTPM: 186.9
Samples: 4
Max nTPM: 206.8
Min nTPM: 171.5
RHH5313_R3680
171.5
RHH5221_R3593
187.1
RHH5250_R3622
182.2
RHH5279_R3651
206.8
Intermediate monocyte nTPM: 164.7
Samples: 4
Max nTPM: 211.1
Min nTPM: 114.2
RHH5314_R3681
171.5
RHH5222_R3594
114.2
RHH5251_R3623
162.0
RHH5280_R3652
211.1
Non-classical monocyte nTPM: 145.9
Samples: 4
Max nTPM: 206.5
Min nTPM: 100.8
RHH5315_R3682
149.4
RHH5223_R3595
100.8
RHH5252_R3624
127.0
RHH5281_R3653
206.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
92.7
Schmiedel sample id
TPM
Classical monocyte TPM: 92.7
Samples: 91
Max TPM: 164.8
Min TPM: 62.5
MONOCYTES_1
164.8
MONOCYTES_2
150.0
MONOCYTES_3
147.2
MONOCYTES_4
141.8
MONOCYTES_5
141.0
MONOCYTES_6
118.4
MONOCYTES_7
117.6
MONOCYTES_8
117.2
MONOCYTES_9
117.0
MONOCYTES_10
114.9
MONOCYTES_11
109.3
MONOCYTES_12
108.1
MONOCYTES_13
108.0
MONOCYTES_14
108.0
MONOCYTES_15
108.0
MONOCYTES_16
108.0
MONOCYTES_17
107.6
MONOCYTES_18
107.2
MONOCYTES_19
105.6
MONOCYTES_20
104.4
MONOCYTES_21
103.8
MONOCYTES_22
103.7
MONOCYTES_23
102.9
MONOCYTES_24
102.4
MONOCYTES_25
99.7
MONOCYTES_26
99.7
MONOCYTES_27
99.6
MONOCYTES_28
99.4
MONOCYTES_29
98.7
MONOCYTES_30
98.3
MONOCYTES_31
95.9
MONOCYTES_32
94.9
MONOCYTES_33
94.5
MONOCYTES_34
94.3
MONOCYTES_35
94.0
MONOCYTES_36
93.5
MONOCYTES_37
93.4
MONOCYTES_38
92.9
MONOCYTES_39
92.3
MONOCYTES_40
92.1
MONOCYTES_41
91.8
MONOCYTES_42
90.9
MONOCYTES_43
90.7
MONOCYTES_44
90.7
MONOCYTES_45
90.2
MONOCYTES_46
89.8
MONOCYTES_47
89.7
MONOCYTES_48
89.7
MONOCYTES_49
89.5
MONOCYTES_50
89.2
MONOCYTES_51
88.4
MONOCYTES_52
86.6
MONOCYTES_53
86.5
MONOCYTES_54
86.4
MONOCYTES_55
85.9
MONOCYTES_56
85.1
MONOCYTES_57
84.9
MONOCYTES_58
84.2
MONOCYTES_59
83.9
MONOCYTES_60
83.9
MONOCYTES_61
83.5
MONOCYTES_62
83.4
MONOCYTES_63
82.5
MONOCYTES_64
82.1
MONOCYTES_65
81.6
MONOCYTES_66
80.5
MONOCYTES_67
80.2
MONOCYTES_68
78.4
MONOCYTES_69
77.9
MONOCYTES_70
77.9
MONOCYTES_71
77.3
MONOCYTES_72
77.1
MONOCYTES_73
76.4
MONOCYTES_74
76.2
MONOCYTES_75
75.4
MONOCYTES_76
75.2
MONOCYTES_77
75.0
MONOCYTES_78
74.2
MONOCYTES_79
74.2
MONOCYTES_80
74.1
MONOCYTES_81
73.5
MONOCYTES_82
73.5
MONOCYTES_83
72.4
MONOCYTES_84
71.9
MONOCYTES_85
69.8
MONOCYTES_86
69.2
MONOCYTES_87
68.5
MONOCYTES_88
67.7
MONOCYTES_89
66.4
MONOCYTES_90
65.2
MONOCYTES_91
62.5
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Non-classical monocyte TPM: 56.4
Samples: 90
Max TPM: 77.3
Min TPM: 45.0
M2_1
77.3
M2_2
75.8
M2_3
71.0
M2_4
70.7
M2_5
66.9
M2_6
66.9
M2_7
66.3
M2_8
66.2
M2_9
64.9
M2_10
64.2
M2_11
64.1
M2_12
63.6
M2_13
63.1
M2_14
61.8
M2_15
61.4
M2_16
60.9
M2_17
60.8
M2_18
60.8
M2_19
60.4
M2_20
60.2
M2_21
60.1
M2_22
59.9
M2_23
59.8
M2_24
59.6
M2_25
59.5
M2_26
59.3
M2_27
59.2
M2_28
58.8
M2_29
58.6
M2_30
58.6
M2_31
58.3
M2_32
58.3
M2_33
58.2
M2_34
58.2
M2_35
58.1
M2_36
58.1
M2_37
57.9
M2_38
57.8
M2_39
57.8
M2_40
57.8
M2_41
57.5
M2_42
57.4
M2_43
57.0
M2_44
56.6
M2_45
56.6
M2_46
56.4
M2_47
56.0
M2_48
55.9
M2_49
55.7
M2_50
54.9
M2_51
54.8
M2_52
54.7
M2_53
54.6
M2_54
54.6
M2_55
54.5
M2_56
54.0
M2_57
53.6
M2_58
53.5
M2_59
53.0
M2_60
52.9
M2_61
52.9
M2_62
52.6
M2_63
52.5
M2_64
52.4
M2_65
52.2
M2_66
52.0
M2_67
51.6
M2_68
51.5
M2_69
51.4
M2_70
51.3
M2_71
50.5
M2_72
50.5
M2_73
50.2
M2_74
50.0
M2_75
49.7
M2_76
49.5
M2_77
49.4
M2_78
49.3
M2_79
49.3
M2_80
49.1
M2_81
48.7
M2_82
48.7
M2_83
48.3
M2_84
48.2
M2_85
48.0
M2_86
47.3
M2_87
47.2
M2_88
46.6
M2_89
45.2
M2_90
45.0
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