BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:753.7 nTPM
HPA Brain:935.3 nTPM
GTEx:753.7 nTPM
FANTOM5:852.1 Scaled Tags Per Million
Mouse:2865.0 nTPM
Rat:1352.4 nTPM
Pig:481.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 935.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 752.7
2019 Male, age 18, unknown 950.1
2411 Female, age 72, unknown 835.9
1870 Female, age 42, unknown 829.5
1827 Male, age 72, unknown 792.1
2828 Female, age 72, unknown 762.5
1833 Male, age 53, unknown 726.4
2219 Male, age 76, both hemispheres 690.5
1830 Male, age 51, unknown 689.0
2586 Male, age 75, left hemisphere 665.0
2666 Male, age 74, left hemisphere 586.3
Dorsal raphe nucleus
nTPM: 861.9
2298 Female, age 72, unknown 1054.1
2016 Female, age 72, unknown 914.1
1828 Male, age 53, unknown 870.1
2047 Male, age 72, unknown 821.9
2750 Male, age 76, both hemispheres 649.0
Inferior colliculus
nTPM: 780.8
2097 Female, age 72, unknown 912.4
1848 Female, age 42, unknown 799.1
1890 Male, age 53, unknown 753.8
2849 Male, age 72, unknown 657.9
Median raphe nucleus
nTPM: 812.6
2220 Male, age 76, midline 812.6
Periaquaductal grey, anterior
nTPM: 803.9
1795 Male, age 51, unknown 859.2
1947 Male, age 18, unknown 808.0
2502 Female, age 75, unknown 744.6
Periaquaductal grey, dorsal
nTPM: 800.0
2850 Male, age 76, both hemispheres 964.4
1840 Male, age 53, unknown 843.3
1831 Male, age 72, unknown 734.1
2464 Female, age 72, unknown 658.4
Periaquaductal grey, lateral
nTPM: 935.3
2272 Male, age 74, both hemispheres 1048.9
2140 Male, age 76, both hemispheres 996.3
2053 Male, age 18, unknown 760.9
Pretectal area
nTPM: 875.2
2273 Male, age 74, both hemispheres 1101.1
1817 Female, age 42, unknown 978.3
1944 Female, age 72, unknown 974.6
2007 Male, age 72, unknown 957.9
2224 Female, age 72, unknown 900.8
1816 Male, age 51, unknown 885.8
2667 Female, age 75, unknown 831.1
2407 Male, age 75, both hemispheres 817.4
1815 Male, age 53, unknown 809.5
2825 Male, age 18, unknown 690.0
2316 Male, age 76, right hemisphere 681.0
Red nucleus
nTPM: 790.1
1821 Female, age 72, unknown 932.5
2785 Male, age 18, unknown 932.0
2503 Female, age 72, unknown 855.6
1865 Male, age 51, unknown 836.5
1954 Female, age 42, unknown 833.1
2769 Male, age 72, unknown 816.6
2227 Male, age 72, unknown 801.3
1904 Male, age 53, unknown 796.9
2725 Female, age 75, unknown 727.1
2823 Male, age 76, right hemisphere 710.2
2588 Male, age 74, left hemisphere 634.4
2584 Male, age 75, left hemisphere 604.7
Substantia nigra
nTPM: 849.4
1916 Female, age 42, unknown 1099.6
2590 Female, age 75, unknown 909.2
1889 Female, age 72, unknown 906.9
2409 Female, age 72, unknown 896.6
1851 Male, age 51, unknown 890.1
2241 Male, age 72, unknown 873.2
1941 Male, age 53, unknown 825.9
2699 Male, age 18, unknown 763.3
2583 Male, age 75, right hemisphere 690.8
2665 Male, age 74, both hemispheres 638.7
Superior colliculus
nTPM: 772.0
1796 Male, age 53, unknown 871.1
2587 Male, age 74, left hemisphere 863.0
2668 Female, age 75, unknown 857.1
2261 Male, age 18, unknown 845.6
2087 Female, age 72, unknown 822.1
1995 Male, age 72, unknown 776.2
1913 Female, age 42, unknown 759.7
1839 Male, age 51, unknown 696.8
2664 Male, age 75, both hemispheres 652.7
1895 Male, age 76, right hemisphere 576.3
Ventral tegmental area
nTPM: 807.3
2410 Female, age 72, unknown 938.1
1915 Female, age 42, unknown 901.2
1942 Male, age 51, unknown 773.0
2223 Female, age 72, unknown 772.4
2021 Male, age 53, unknown 734.4
2218 Male, age 76, both hemispheres 724.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 753.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 753.7
Samples: 183

Max nTPM: 2048.3
Min nTPM: 404.3
Std nTPM: 266.7
Median nTPM: 684.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2048.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1731.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1691.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1672.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1602.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 1538.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 1493.2
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 1439.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1392.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1359.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1306.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 852.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 852.1
FF:10158-103A5 76 years, female 852.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 481.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 432.7
Samples: 3

Max nTPM: 476.2
Min nTPM: 361.3
Sample A Female 476.2
Sample B Female 361.3
Sample C Male 460.7
Midbrain
nTPM: 398.2
Samples: 3

Max nTPM: 468.2
Min nTPM: 359.5
Sample B Female 366.9
Sample C Male 468.2
Sample D Male 359.5
Periaqueductal gray
nTPM: 354.6
Samples: 3

Max nTPM: 408.3
Min nTPM: 300.8
Sample B Female 354.7
Sample C Male 408.3
Sample D Male 300.8
Superior colliculi
nTPM: 481.2
Samples: 4

Max nTPM: 534.8
Min nTPM: 409.7
Sample A Female 491.4
Sample B Female 488.7
Sample C Male 534.8
Sample D Male 409.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2865.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2865.0
Samples: 4

Max nTPM: 2940.8
Min nTPM: 2748.1
Sample A 2904.8
Sample B 2866.2
Sample C 2940.8
Sample D 2748.1

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 1352.4
Rat sample Sample description nTPM
Midbrain
nTPM: 1352.4
Samples: 4

Max nTPM: 1424.3
Min nTPM: 1226.2
Sample A 1408.8
Sample A 1424.3
Sample A 1350.3
Sample A 1226.2

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