HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:130.1 nTPM
HPA Brain:149.8 nTPM
GTEx:130.1 nTPM
FANTOM5:211.6 Scaled Tags Per Million
Pig:52.9 nTPM
Mouse:229.5 nTPM
Allen mouse:6.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038873Antibody HPA056195
Glial cells LowNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 149.8
Sample id Sample description nTPM
Hippocampus
nTPM: 121.5
1898 Male, age 80, left hemisphere 172.6
2529 Female, age 94, left hemisphere 122.1
1911 Female, age 85, right hemisphere 119.2
1855 Male, age 76, left hemisphere 112.5
2621 Female, age 67, right hemisphere 111.2
2148 Female, age 91, left hemisphere 91.1
Dentate gyrus
nTPM: 116.4
1927 Female, age 91, both hemispheres 132.4
2010 Male, age 76, both hemispheres 130.3
2530 Female, age 94, left hemisphere 120.6
2246 Female, age 85, both hemispheres 118.5
2528 Male, age 74, both hemispheres 109.5
2531 Female, age 67, both hemispheres 86.8
Entorhinal gyrus
nTPM: 114.0
1938 Female, age 85, left hemisphere 148.4
2764 Male, age 80, right hemisphere 135.7
1787 Male, age 76, left hemisphere 119.7
2117 Female, age 91, right hemisphere 114.2
2613 Female, age 94, left hemisphere 87.5
2686 Male, age 75, right hemisphere 78.5
Hippocampus, CA1
nTPM: 135.7
2749 Male, age 80, left hemisphere 195.6
2527 Male, age 74, both hemispheres 132.4
1873 Female, age 85, both hemispheres 131.9
2045 Male, age 76, both hemispheres 112.2
2082 Female, age 91, right hemisphere 106.6
Hippocampus, CA2
nTPM: 131.0
1892 Male, age 76, both hemispheres 156.9
2249 Male, age 74, both hemispheres 148.6
1963 Male, age 80, left hemisphere 140.4
2437 Female, age 94, left hemisphere 122.5
1940 Female, age 85, left hemisphere 114.2
2113 Female, age 91, right hemisphere 103.3
Hippocampus, CA3
nTPM: 122.8
2436 Male, age 74, both hemispheres 161.8
1867 Male, age 76, both hemispheres 157.2
2137 Male, age 80, left hemisphere 132.5
1891 Female, age 85, both hemispheres 108.5
2620 Female, age 94, left hemisphere 89.5
2861 Female, age 67, both hemispheres 87.2
Parahippocampal cortex
nTPM: 116.0
1850 Male, age 80, both hemispheres 141.2
1990 Female, age 91, right hemisphere 139.5
1933 Female, age 85, both hemispheres 137.8
2250 Female, age 67, right hemisphere 129.3
2245 Female, age 91, both hemispheres 123.4
2532 Female, age 72, left hemisphere 121.2
2018 Male, age 76, both hemispheres 118.1
2693 Female, age 94, both hemispheres 96.2
2622 Female, age 67, right hemisphere 79.1
2692 Male, age 74, both hemispheres 74.1
Perirhinal gyrus
nTPM: 149.8
1847 Female, age 91, left hemisphere 186.5
1794 Male, age 80, right hemisphere 166.2
1841 Female, age 85, right hemisphere 161.6
2848 Male, age 76, right hemisphere 118.3
2521 Female, age 94, right hemisphere 116.2
Subiculum
nTPM: 121.3
2438 Female, age 94, left hemisphere 151.5
1977 Female, age 85, both hemispheres 142.3
1901 Male, age 80, both hemispheres 135.5
2042 Male, age 76, both hemispheres 106.2
2619 Male, age 74, both hemispheres 98.8
2729 Female, age 91, right hemisphere 93.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 130.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 130.1
Samples: 255

Max nTPM: 290.0
Min nTPM: 50.5
Std nTPM: 31.2
Median nTPM: 125.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 290.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 224.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 215.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 214.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 214.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 206.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 203.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 201.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 200.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 198.8
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 197.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 211.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 211.6
FF:10169-103B7 60 years, female 281.4
FF:10153-102I9 76 years, female 141.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 52.9
Pig sample Sample description nTPM
Subiculum
nTPM: 43.5
Samples: 4

Max nTPM: 54.6
Min nTPM: 37.6
Sample A Female 54.6
Sample B Female 43.3
Sample C Male 38.5
Sample D Male 37.6
Dorsal hippocampus
nTPM: 52.9
Samples: 4

Max nTPM: 66.2
Min nTPM: 42.4
Sample A Female 66.2
Sample B Female 50.1
Sample C Male 52.9
Sample D Male 42.4
Entorhinal cortex
nTPM: 41.4
Samples: 4

Max nTPM: 48.2
Min nTPM: 36.5
Sample A Female 41.2
Sample B Female 48.2
Sample C Male 39.7
Sample D Male 36.5
Ventral hippocampus
nTPM: 48.5
Samples: 4

Max nTPM: 54.8
Min nTPM: 40.9
Sample A Female 54.8
Sample B Female 40.9
Sample C Male 50.5
Sample D Male 47.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 229.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 212.1
Samples: 4

Max nTPM: 237.0
Min nTPM: 189.9
Sample A Male 189.9
Sample B Male 225.1
Sample C Female 237.0
Sample D Female 196.2
Hippocampal formation
nTPM: 229.5
Samples: 4

Max nTPM: 250.4
Min nTPM: 211.3
Sample A Male 232.9
Sample B Male 211.3
Sample C Female 223.2
Sample D Female 250.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
513495 Antisense, RP_040810_02_A05, Mouse strain C57BL/6J (56 days, male) 7.6
81599620 Antisense, RP_071127_04_D07, Mouse strain C57BL/6J (56 days, male) 5.8

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