MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:154.3 nTPM
HPA Brain:130.1 nTPM
GTEx:154.3 nTPM
FANTOM5:126.2 Scaled Tags Per Million
Pig:62.5 nTPM
Mouse:193.3 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 130.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.2
2411 Female, age 72, unknown 133.8
2019 Male, age 18, unknown 126.4
1870 Female, age 42, unknown 120.3
2219 Male, age 76, both hemispheres 115.9
1827 Male, age 72, unknown 105.6
2586 Male, age 75, left hemisphere 104.0
1833 Male, age 53, unknown 97.9
2828 Female, age 72, unknown 97.4
1830 Male, age 51, unknown 90.6
2666 Male, age 74, left hemisphere 69.8
Dorsal raphe nucleus
nTPM: 130.1
2298 Female, age 72, unknown 175.7
2047 Male, age 72, unknown 143.2
2750 Male, age 76, both hemispheres 114.1
1828 Male, age 53, unknown 110.7
2016 Female, age 72, unknown 106.5
Inferior colliculus
nTPM: 113.0
2097 Female, age 72, unknown 129.0
1890 Male, age 53, unknown 118.6
1848 Female, age 42, unknown 109.6
2849 Male, age 72, unknown 95.0
Median raphe nucleus
nTPM: 113.2
2220 Male, age 76, midline 113.2
Periaquaductal grey, anterior
nTPM: 117.3
1795 Male, age 51, unknown 119.4
1947 Male, age 18, unknown 119.2
2502 Female, age 75, unknown 113.4
Periaquaductal grey, dorsal
nTPM: 101.2
1840 Male, age 53, unknown 114.3
2850 Male, age 76, both hemispheres 100.8
1831 Male, age 72, unknown 96.8
2464 Female, age 72, unknown 93.0
Periaquaductal grey, lateral
nTPM: 104.2
2272 Male, age 74, both hemispheres 127.2
2053 Male, age 18, unknown 103.7
2140 Male, age 76, both hemispheres 81.7
Pretectal area
nTPM: 116.4
2224 Female, age 72, unknown 138.6
2007 Male, age 72, unknown 134.7
1817 Female, age 42, unknown 129.2
1944 Female, age 72, unknown 129.1
2273 Male, age 74, both hemispheres 126.8
2667 Female, age 75, unknown 116.6
1816 Male, age 51, unknown 116.5
1815 Male, age 53, unknown 107.9
2407 Male, age 75, both hemispheres 94.8
2316 Male, age 76, right hemisphere 93.6
2825 Male, age 18, unknown 93.2
Red nucleus
nTPM: 107.4
1821 Female, age 72, unknown 129.3
2725 Female, age 75, unknown 127.2
2785 Male, age 18, unknown 114.4
1954 Female, age 42, unknown 111.4
2503 Female, age 72, unknown 111.3
1904 Male, age 53, unknown 110.7
2227 Male, age 72, unknown 107.5
2769 Male, age 72, unknown 105.4
1865 Male, age 51, unknown 105.0
2823 Male, age 76, right hemisphere 94.1
2584 Male, age 75, left hemisphere 90.1
2588 Male, age 74, left hemisphere 82.4
Substantia nigra
nTPM: 113.4
1916 Female, age 42, unknown 156.4
1889 Female, age 72, unknown 135.3
1851 Male, age 51, unknown 134.8
1941 Male, age 53, unknown 130.2
2409 Female, age 72, unknown 110.3
2241 Male, age 72, unknown 107.1
2590 Female, age 75, unknown 99.3
2699 Male, age 18, unknown 94.5
2583 Male, age 75, right hemisphere 86.4
2665 Male, age 74, both hemispheres 79.3
Superior colliculus
nTPM: 99.7
2587 Male, age 74, left hemisphere 115.1
1895 Male, age 76, right hemisphere 115.0
2261 Male, age 18, unknown 107.6
1796 Male, age 53, unknown 106.6
2087 Female, age 72, unknown 102.8
1913 Female, age 42, unknown 99.3
1995 Male, age 72, unknown 95.7
2668 Female, age 75, unknown 94.6
1839 Male, age 51, unknown 90.5
2664 Male, age 75, both hemispheres 69.9
Ventral tegmental area
nTPM: 118.5
2410 Female, age 72, unknown 137.7
1915 Female, age 42, unknown 127.0
1942 Male, age 51, unknown 120.6
2218 Male, age 76, both hemispheres 114.1
2223 Female, age 72, unknown 112.7
2021 Male, age 53, unknown 98.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 154.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 154.3
Samples: 183

Max nTPM: 279.4
Min nTPM: 82.9
Std nTPM: 33.0
Median nTPM: 149.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 279.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 254.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 234.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 234.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 233.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 233.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 232.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 227.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 226.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 224.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 220.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 126.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.2
FF:10158-103A5 76 years, female 126.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 62.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.5
Samples: 4

Max nTPM: 78.5
Min nTPM: 45.0
Sample A Female 78.5
Sample B Female 48.7
Sample C Male 61.9
Sample D Male 45.0
Midbrain
nTPM: 62.5
Samples: 4

Max nTPM: 75.3
Min nTPM: 52.7
Sample A Female 75.3
Sample B Female 66.1
Sample C Male 52.7
Sample D Male 55.9
Periaqueductal gray
nTPM: 55.8
Samples: 3

Max nTPM: 59.1
Min nTPM: 52.7
Sample B Female 55.5
Sample C Male 59.1
Sample D Male 52.7
Superior colliculi
nTPM: 59.8
Samples: 4

Max nTPM: 78.2
Min nTPM: 47.0
Sample A Female 78.2
Sample B Female 47.0
Sample C Male 60.2
Sample D Male 53.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 193.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 193.3
Samples: 4

Max nTPM: 221.8
Min nTPM: 169.7
Sample A Male 221.8
Sample B Male 180.5
Sample C Female 169.7
Sample D Female 201.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
81599620 Antisense, RP_071127_04_D07, Mouse strain C57BL/6J (56 days, male) 6.5
513495 Antisense, RP_040810_02_A05, Mouse strain C57BL/6J (56 days, male) 2.8

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