A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.4
nTPM
Monaco:
54.6
nTPM
Schmiedel:
42.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.4
HPA sample
nTPM
Classical monocyte nTPM: 9.4
Samples: 6
Max nTPM: 12.8
Min nTPM: 6.2
P10809_1003
11.3
P10809_1020
12.8
P10809_1039
11.1
P10809_1058
6.6
P10809_1080
8.6
P10809_1107
6.2
Intermediate monocyte nTPM: 15.6
Samples: 6
Max nTPM: 28.2
Min nTPM: 6.5
P10809_1004
17.7
P10809_1023
28.2
P10809_1042
16.1
P10809_1061
15.0
P10809_1081
10.2
P10809_1108
6.5
Non-classical monocyte nTPM: 20.4
Samples: 5
Max nTPM: 55.1
Min nTPM: 8.4
P10809_1005
15.5
P10809_1053
11.6
P10809_1072
55.1
P10809_1082
8.4
P10809_1109
11.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.6
Monaco sample
nTPM
Classical monocyte nTPM: 34.4
Samples: 4
Max nTPM: 40.4
Min nTPM: 27.0
RHH5313_R3680
36.4
RHH5221_R3593
33.7
RHH5250_R3622
40.4
RHH5279_R3651
27.0
Intermediate monocyte nTPM: 50.8
Samples: 4
Max nTPM: 66.3
Min nTPM: 37.5
RHH5314_R3681
44.5
RHH5222_R3594
54.8
RHH5251_R3623
37.5
RHH5280_R3652
66.3
Non-classical monocyte nTPM: 54.6
Samples: 4
Max nTPM: 68.6
Min nTPM: 47.5
RHH5315_R3682
53.0
RHH5223_R3595
68.6
RHH5252_R3624
47.5
RHH5281_R3653
49.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.1
Schmiedel sample id
TPM
Classical monocyte TPM: 23.0
Samples: 91
Max TPM: 31.3
Min TPM: 14.8
MONOCYTES_1
31.3
MONOCYTES_2
30.6
MONOCYTES_3
30.0
MONOCYTES_4
30.0
MONOCYTES_5
29.7
MONOCYTES_6
29.5
MONOCYTES_7
29.4
MONOCYTES_8
29.2
MONOCYTES_9
29.0
MONOCYTES_10
28.6
MONOCYTES_11
28.5
MONOCYTES_12
27.8
MONOCYTES_13
27.7
MONOCYTES_14
27.5
MONOCYTES_15
27.4
MONOCYTES_16
27.2
MONOCYTES_17
26.6
MONOCYTES_18
26.5
MONOCYTES_19
26.4
MONOCYTES_20
25.9
MONOCYTES_21
25.8
MONOCYTES_22
25.8
MONOCYTES_23
25.6
MONOCYTES_24
25.4
MONOCYTES_25
25.2
MONOCYTES_26
25.2
MONOCYTES_27
25.1
MONOCYTES_28
24.9
MONOCYTES_29
24.7
MONOCYTES_30
24.5
MONOCYTES_31
24.4
MONOCYTES_32
24.3
MONOCYTES_33
24.3
MONOCYTES_34
24.2
MONOCYTES_35
24.2
MONOCYTES_36
24.1
MONOCYTES_37
24.0
MONOCYTES_38
23.9
MONOCYTES_39
23.7
MONOCYTES_40
23.7
MONOCYTES_41
23.7
MONOCYTES_42
23.6
MONOCYTES_43
23.6
MONOCYTES_44
23.5
MONOCYTES_45
23.4
MONOCYTES_46
23.4
MONOCYTES_47
23.4
MONOCYTES_48
23.3
MONOCYTES_49
23.0
MONOCYTES_50
22.9
MONOCYTES_51
22.9
MONOCYTES_52
22.4
MONOCYTES_53
22.3
MONOCYTES_54
22.2
MONOCYTES_55
21.8
MONOCYTES_56
21.8
MONOCYTES_57
21.8
MONOCYTES_58
21.5
MONOCYTES_59
21.5
MONOCYTES_60
21.4
MONOCYTES_61
21.3
MONOCYTES_62
21.1
MONOCYTES_63
20.6
MONOCYTES_64
20.4
MONOCYTES_65
20.4
MONOCYTES_66
20.3
MONOCYTES_67
20.1
MONOCYTES_68
20.0
MONOCYTES_69
19.8
MONOCYTES_70
19.7
MONOCYTES_71
19.5
MONOCYTES_72
19.3
MONOCYTES_73
19.0
MONOCYTES_74
18.9
MONOCYTES_75
18.8
MONOCYTES_76
18.7
MONOCYTES_77
18.7
MONOCYTES_78
18.6
MONOCYTES_79
18.5
MONOCYTES_80
18.4
MONOCYTES_81
18.1
MONOCYTES_82
18.0
MONOCYTES_83
17.8
MONOCYTES_84
17.5
MONOCYTES_85
17.1
MONOCYTES_86
17.1
MONOCYTES_87
16.9
MONOCYTES_88
16.8
MONOCYTES_89
16.5
MONOCYTES_90
15.9
MONOCYTES_91
14.8
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Non-classical monocyte TPM: 42.1
Samples: 90
Max TPM: 54.8
Min TPM: 31.0
M2_1
54.8
M2_2
52.4
M2_3
52.0
M2_4
51.9
M2_5
51.4
M2_6
51.1
M2_7
49.9
M2_8
49.3
M2_9
49.2
M2_10
49.1
M2_11
49.0
M2_12
48.2
M2_13
48.2
M2_14
47.8
M2_15
47.7
M2_16
47.5
M2_17
47.5
M2_18
46.7
M2_19
46.4
M2_20
46.3
M2_21
45.6
M2_22
45.4
M2_23
45.3
M2_24
45.2
M2_25
45.0
M2_26
44.9
M2_27
44.7
M2_28
44.3
M2_29
44.0
M2_30
43.8
M2_31
43.7
M2_32
43.7
M2_33
43.7
M2_34
43.5
M2_35
43.4
M2_36
43.2
M2_37
43.1
M2_38
43.1
M2_39
42.7
M2_40
42.5
M2_41
42.3
M2_42
42.2
M2_43
42.2
M2_44
41.9
M2_45
41.8
M2_46
41.7
M2_47
41.2
M2_48
41.2
M2_49
40.8
M2_50
40.7
M2_51
40.7
M2_52
40.7
M2_53
40.7
M2_54
40.6
M2_55
40.0
M2_56
39.9
M2_57
39.6
M2_58
39.6
M2_59
39.4
M2_60
39.3
M2_61
39.0
M2_62
38.9
M2_63
38.9
M2_64
38.9
M2_65
38.9
M2_66
38.9
M2_67
38.8
M2_68
38.4
M2_69
38.1
M2_70
38.0
M2_71
37.8
M2_72
37.8
M2_73
37.8
M2_74
37.5
M2_75
37.1
M2_76
36.7
M2_77
36.6
M2_78
36.4
M2_79
36.4
M2_80
36.3
M2_81
36.2
M2_82
36.1
M2_83
35.8
M2_84
35.3
M2_85
35.2
M2_86
35.2
M2_87
35.0
M2_88
34.1
M2_89
31.9
M2_90
31.0
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