A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
15.8
nTPM
Schmiedel:
28.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
NK-cell nTPM: 0.5
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.0
P10809_1013
1.3
P10809_1033
0.3
P10809_1052
0.2
P10809_1071
1.1
P10809_1093
0.2
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.8
Monaco sample
nTPM
NK-cell nTPM: 15.7
Samples: 4
Max nTPM: 24.2
Min nTPM: 10.7
RHH5316_R3683
24.2
RHH5224_R3596
13.7
RHH5253_R3625
10.7
RHH5282_R3654
14.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.6
Schmiedel sample id
TPM
NK-cell TPM: 28.6
Samples: 90
Max TPM: 45.0
Min TPM: 16.3
NK_1
45.0
NK_2
43.7
NK_3
39.0
NK_4
38.7
NK_5
38.1
NK_6
36.7
NK_7
36.6
NK_8
36.1
NK_9
35.7
NK_10
35.5
NK_11
35.0
NK_12
34.9
NK_13
34.9
NK_14
34.8
NK_15
34.5
NK_16
34.3
NK_17
33.8
NK_18
33.3
NK_19
33.3
NK_20
32.3
NK_21
32.0
NK_22
31.8
NK_23
31.3
NK_24
31.2
NK_25
30.9
NK_26
30.8
NK_27
30.7
NK_28
30.6
NK_29
30.5
NK_30
30.3
NK_31
30.3
NK_32
30.1
NK_33
30.1
NK_34
30.1
NK_35
29.9
NK_36
29.9
NK_37
29.8
NK_38
29.7
NK_39
29.3
NK_40
29.2
NK_41
28.9
NK_42
28.7
NK_43
28.4
NK_44
28.4
NK_45
28.4
NK_46
28.0
NK_47
28.0
NK_48
27.8
NK_49
27.5
NK_50
27.4
NK_51
27.2
NK_52
27.1
NK_53
27.0
NK_54
26.9
NK_55
26.8
NK_56
26.8
NK_57
26.4
NK_58
26.1
NK_59
25.9
NK_60
25.8
NK_61
25.8
NK_62
25.6
NK_63
25.5
NK_64
25.4
NK_65
25.3
NK_66
25.3
NK_67
25.2
NK_68
25.0
NK_69
24.8
NK_70
24.6
NK_71
24.5
NK_72
24.3
NK_73
24.0
NK_74
23.9
NK_75
23.7
NK_76
23.7
NK_77
23.7
NK_78
23.1
NK_79
23.1
NK_80
23.1
NK_81
22.8
NK_82
22.7
NK_83
22.5
NK_84
22.0
NK_85
21.5
NK_86
20.2
NK_87
19.7
NK_88
17.8
NK_89
16.8
NK_90
16.3
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