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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:550.4 nTPM
HPA Brain:241.3 nTPM
GTEx:550.4 nTPM
FANTOM5:79.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.3
Sample id Sample description nTPM
Amygdala
nTPM: 221.8
2517 Female, age 94, left hemisphere 262.3
2514 Male, age 75, right hemisphere 215.1
2695 Female, age 67, right hemisphere 215.1
2814 Male, age 76, right hemisphere 212.6
1987 Female, age 91, left hemisphere 204.1
Basal amygdala
nTPM: 226.8
2827 Female, age 67, right hemisphere 267.3
2685 Female, age 94, left hemisphere 244.2
2609 Male, age 75, right hemisphere 243.7
2110 Male, age 80, left hemisphere 241.7
2243 Female, age 91, right hemisphere 190.3
1955 Male, age 76, both hemispheres 173.6
Central amygdala
nTPM: 231.9
2826 Female, age 94, left hemisphere 345.3
2515 Male, age 75, right hemisphere 250.7
2239 Male, age 80, left hemisphere 216.0
1905 Male, age 76, both hemispheres 186.8
2701 Female, age 91, right hemisphere 160.7
Corticomedial amygdala
nTPM: 206.7
2535 Female, age 67, right hemisphere 261.8
2829 Male, age 80, left hemisphere 251.5
2428 Male, age 75, right hemisphere 205.5
2429 Female, age 94, left hemisphere 200.4
2242 Female, age 91, right hemisphere 187.9
2240 Male, age 76, both hemispheres 133.1
Lateral amygdala
nTPM: 241.3
2534 Female, age 94, left hemisphere 288.5
2830 Female, age 67, right hemisphere 282.3
2516 Male, age 75, right hemisphere 258.8
2256 Male, age 80, left hemisphere 219.4
2255 Female, age 91, right hemisphere 209.0
1883 Male, age 76, both hemispheres 189.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

550.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 550.4
Samples: 181

Max nTPM: 2074.2
Min nTPM: 203.6
Std nTPM: 223.2
Median nTPM: 514.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2074.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1300.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1274.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1259.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1240.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1236.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 961.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 883.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 876.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 870.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 861.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 860.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 843.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 823.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 815.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 801.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 801.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 791.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 786.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 785.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 751.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 749.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 747.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 743.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 717.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 709.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 708.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 700.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 693.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 693.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 689.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 688.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 688.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 677.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 665.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 663.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 660.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 650.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 650.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 641.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 640.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 639.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 638.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 636.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 634.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 630.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 627.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 623.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 622.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 621.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 621.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 618.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 614.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 602.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 600.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 594.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 592.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 591.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 584.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 581.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 579.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 578.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 575.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 574.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 573.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 571.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 569.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 564.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 556.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 556.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 555.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 553.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 552.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 551.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 550.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 550.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 549.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 549.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 549.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 548.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 545.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 537.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 535.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 533.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 531.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 528.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 523.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 520.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 518.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 514.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 514.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 514.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 509.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 508.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 507.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 497.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 497.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 497.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 493.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 493.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 492.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 489.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 481.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 480.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 477.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 475.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 471.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 471.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 470.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 470.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 470.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 464.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 463.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 463.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 463.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 461.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 459.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 455.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 455.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 452.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 447.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 445.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 442.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 435.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 435.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 433.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 431.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 428.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 426.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 422.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 420.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 418.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 417.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 416.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 415.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 414.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 412.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 407.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 406.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 404.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 400.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 396.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 388.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 386.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 383.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 380.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 379.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 378.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 377.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 373.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 373.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 372.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 371.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 368.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 367.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 364.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 362.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 362.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 360.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 359.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 359.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 356.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 346.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 331.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 328.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 327.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 326.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 322.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 319.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 317.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 313.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 311.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 310.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 295.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 290.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 287.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 274.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 274.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 256.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 207.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 203.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

79.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 79.6
FF:10151-102I7 76 years, female 79.6

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