MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:346.7 nTPM
HPA Brain:206.7 nTPM
GTEx:346.7 nTPM
FANTOM5:61.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 206.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 171.2
2586 Male, age 75, left hemisphere 236.1
1827 Male, age 72, unknown 193.4
2828 Female, age 72, unknown 180.6
2666 Male, age 74, left hemisphere 174.7
1870 Female, age 42, unknown 171.2
2019 Male, age 18, unknown 162.9
2411 Female, age 72, unknown 158.3
1833 Male, age 53, unknown 148.7
2219 Male, age 76, both hemispheres 143.5
1830 Male, age 51, unknown 142.9
Dorsal raphe nucleus
nTPM: 176.1
2298 Female, age 72, unknown 206.9
2047 Male, age 72, unknown 183.6
1828 Male, age 53, unknown 171.4
2750 Male, age 76, both hemispheres 163.7
2016 Female, age 72, unknown 155.0
Inferior colliculus
nTPM: 173.1
2097 Female, age 72, unknown 189.9
1890 Male, age 53, unknown 181.8
1848 Female, age 42, unknown 162.5
2849 Male, age 72, unknown 158.3
Median raphe nucleus
nTPM: 162.9
2220 Male, age 76, midline 162.9
Periaquaductal grey, anterior
nTPM: 206.7
1795 Male, age 51, unknown 220.4
2502 Female, age 75, unknown 203.9
1947 Male, age 18, unknown 195.8
Periaquaductal grey, dorsal
nTPM: 160.0
1840 Male, age 53, unknown 186.2
1831 Male, age 72, unknown 156.9
2850 Male, age 76, both hemispheres 150.6
2464 Female, age 72, unknown 146.2
Periaquaductal grey, lateral
nTPM: 148.0
2140 Male, age 76, both hemispheres 152.6
2272 Male, age 74, both hemispheres 148.4
2053 Male, age 18, unknown 142.9
Pretectal area
nTPM: 173.7
2007 Male, age 72, unknown 218.1
1816 Male, age 51, unknown 195.2
1944 Female, age 72, unknown 193.4
1817 Female, age 42, unknown 192.0
2224 Female, age 72, unknown 173.0
2667 Female, age 75, unknown 171.7
2825 Male, age 18, unknown 167.2
1815 Male, age 53, unknown 162.8
2273 Male, age 74, both hemispheres 161.2
2316 Male, age 76, right hemisphere 142.1
2407 Male, age 75, both hemispheres 134.0
Red nucleus
nTPM: 165.7
2503 Female, age 72, unknown 204.3
2785 Male, age 18, unknown 197.0
2227 Male, age 72, unknown 178.5
2725 Female, age 75, unknown 174.1
2769 Male, age 72, unknown 172.0
2584 Male, age 75, left hemisphere 167.8
1821 Female, age 72, unknown 164.8
2588 Male, age 74, left hemisphere 162.5
1954 Female, age 42, unknown 148.9
1904 Male, age 53, unknown 146.8
1865 Male, age 51, unknown 145.4
2823 Male, age 76, right hemisphere 126.4
Substantia nigra
nTPM: 177.3
1916 Female, age 42, unknown 228.5
1851 Male, age 51, unknown 202.9
2665 Male, age 74, both hemispheres 193.9
1889 Female, age 72, unknown 186.2
2583 Male, age 75, right hemisphere 178.8
1941 Male, age 53, unknown 175.4
2699 Male, age 18, unknown 164.8
2409 Female, age 72, unknown 157.3
2590 Female, age 75, unknown 153.0
2241 Male, age 72, unknown 132.5
Superior colliculus
nTPM: 174.3
1796 Male, age 53, unknown 214.9
2664 Male, age 75, both hemispheres 209.1
2087 Female, age 72, unknown 198.2
2668 Female, age 75, unknown 189.1
2261 Male, age 18, unknown 178.6
1913 Female, age 42, unknown 164.8
2587 Male, age 74, left hemisphere 162.0
1839 Male, age 51, unknown 149.4
1995 Male, age 72, unknown 146.4
1895 Male, age 76, right hemisphere 130.0
Ventral tegmental area
nTPM: 177.9
1915 Female, age 42, unknown 214.0
1942 Male, age 51, unknown 194.4
2223 Female, age 72, unknown 185.6
2218 Male, age 76, both hemispheres 171.7
2021 Male, age 53, unknown 158.1
2410 Female, age 72, unknown 143.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 346.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 346.7
Samples: 183

Max nTPM: 752.4
Min nTPM: 142.5
Std nTPM: 101.7
Median nTPM: 338.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 752.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 704.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 681.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 607.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 565.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 564.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 554.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 533.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 533.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 531.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 512.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.7
FF:10158-103A5 76 years, female 61.7

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