BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:183.9 nTPM
HPA Brain:275.0 nTPM
GTEx:183.9 nTPM
FANTOM5:240.0 Scaled Tags Per Million
Macaque:62.0 nTPM
Mouse:22.7 nTPM
Rat:12.1 nTPM
Pig:153.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 275.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.1
2828 Female, age 72, unknown 228.7
2586 Male, age 75, left hemisphere 183.7
2666 Male, age 74, left hemisphere 152.2
2019 Male, age 18, unknown 147.6
1870 Female, age 42, unknown 134.8
2411 Female, age 72, unknown 132.1
1827 Male, age 72, unknown 130.6
1833 Male, age 53, unknown 124.4
1830 Male, age 51, unknown 113.1
2219 Male, age 76, both hemispheres 74.3
Dorsal raphe nucleus
nTPM: 224.9
2016 Female, age 72, unknown 277.6
2298 Female, age 72, unknown 266.4
1828 Male, age 53, unknown 261.5
2047 Male, age 72, unknown 197.0
2750 Male, age 76, both hemispheres 121.8
Inferior colliculus
nTPM: 130.7
2097 Female, age 72, unknown 176.9
2849 Male, age 72, unknown 121.2
1890 Male, age 53, unknown 114.6
1848 Female, age 42, unknown 110.2
Median raphe nucleus
nTPM: 148.8
2220 Male, age 76, midline 148.8
Periaquaductal grey, anterior
nTPM: 163.4
1795 Male, age 51, unknown 215.2
2502 Female, age 75, unknown 148.3
1947 Male, age 18, unknown 126.5
Periaquaductal grey, dorsal
nTPM: 223.4
2850 Male, age 76, both hemispheres 284.1
1840 Male, age 53, unknown 231.8
1831 Male, age 72, unknown 214.4
2464 Female, age 72, unknown 163.2
Periaquaductal grey, lateral
nTPM: 275.0
2140 Male, age 76, both hemispheres 298.9
2272 Male, age 74, both hemispheres 275.0
2053 Male, age 18, unknown 251.0
Pretectal area
nTPM: 202.1
2273 Male, age 74, both hemispheres 439.9
2224 Female, age 72, unknown 243.7
1944 Female, age 72, unknown 216.1
2667 Female, age 75, unknown 196.1
2316 Male, age 76, right hemisphere 179.0
1816 Male, age 51, unknown 177.8
2825 Male, age 18, unknown 171.1
1815 Male, age 53, unknown 169.7
2407 Male, age 75, both hemispheres 164.4
1817 Female, age 42, unknown 149.0
2007 Male, age 72, unknown 115.8
Red nucleus
nTPM: 145.9
2725 Female, age 75, unknown 234.8
2503 Female, age 72, unknown 169.9
1821 Female, age 72, unknown 154.8
2769 Male, age 72, unknown 150.1
2227 Male, age 72, unknown 146.2
2785 Male, age 18, unknown 143.2
2823 Male, age 76, right hemisphere 141.1
1865 Male, age 51, unknown 137.1
1954 Female, age 42, unknown 135.4
1904 Male, age 53, unknown 128.7
2584 Male, age 75, left hemisphere 112.1
2588 Male, age 74, left hemisphere 97.5
Substantia nigra
nTPM: 211.2
2699 Male, age 18, unknown 278.0
1851 Male, age 51, unknown 268.3
1916 Female, age 42, unknown 264.6
2241 Male, age 72, unknown 248.9
2409 Female, age 72, unknown 214.6
1941 Male, age 53, unknown 191.3
2590 Female, age 75, unknown 190.1
2583 Male, age 75, right hemisphere 167.7
1889 Female, age 72, unknown 161.1
2665 Male, age 74, both hemispheres 127.3
Superior colliculus
nTPM: 183.5
1995 Male, age 72, unknown 273.9
2087 Female, age 72, unknown 222.0
1913 Female, age 42, unknown 214.1
2587 Male, age 74, left hemisphere 199.0
1796 Male, age 53, unknown 196.2
2664 Male, age 75, both hemispheres 195.1
2261 Male, age 18, unknown 183.6
1839 Male, age 51, unknown 135.4
2668 Female, age 75, unknown 120.2
1895 Male, age 76, right hemisphere 95.3
Ventral tegmental area
nTPM: 195.2
1915 Female, age 42, unknown 251.4
2021 Male, age 53, unknown 220.3
2410 Female, age 72, unknown 199.4
1942 Male, age 51, unknown 190.4
2223 Female, age 72, unknown 156.0
2218 Male, age 76, both hemispheres 153.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 183.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 183.9
Samples: 183

Max nTPM: 457.3
Min nTPM: 52.0
Std nTPM: 78.1
Median nTPM: 170.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 457.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 432.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 423.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 390.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 386.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 369.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 358.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 357.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 347.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 346.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 341.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 240.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 240.0
FF:10158-103A5 76 years, female 240.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 62.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 62.0
Samples: 1

Max nTPM: 62.0
Min nTPM: 62.0
Sample A 62.0
Midbrain
nTPM: 45.9
Samples: 1

Max nTPM: 45.9
Min nTPM: 45.9
Sample A 45.9
Superior colliculi
nTPM: 44.7
Samples: 1

Max nTPM: 44.7
Min nTPM: 44.7
Sample A 44.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 153.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 137.2
Samples: 3

Max nTPM: 164.1
Min nTPM: 111.2
Sample A Female 164.1
Sample B Female 111.2
Sample C Male 136.2
Midbrain
nTPM: 107.2
Samples: 3

Max nTPM: 153.1
Min nTPM: 82.7
Sample B Female 85.7
Sample C Male 153.1
Sample D Male 82.7
Periaqueductal gray
nTPM: 69.6
Samples: 3

Max nTPM: 82.4
Min nTPM: 58.9
Sample B Female 67.5
Sample C Male 82.4
Sample D Male 58.9
Superior colliculi
nTPM: 153.3
Samples: 4

Max nTPM: 228.0
Min nTPM: 108.8
Sample A Female 151.9
Sample B Female 124.6
Sample C Male 228.0
Sample D Male 108.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.7
Samples: 4

Max nTPM: 24.3
Min nTPM: 21.5
Sample A 23.4
Sample B 24.3
Sample C 21.5
Sample D 21.7

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 12.1
Rat sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.6
Sample A 12.1
Sample A 10.6
Sample A 12.3
Sample A 13.3

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