A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
66.3
nTPM
Monaco:
46.4
nTPM
Schmiedel:
12.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.3
HPA sample
nTPM
Memory B-cell nTPM: 59.0
Samples: 6
Max nTPM: 82.1
Min nTPM: 33.1
P10809_1017
33.1
P10809_1025
68.3
P10809_1044
82.1
P10809_1063
58.1
P10809_1092
52.9
P10809_1105
59.4
Naive B-cell nTPM: 66.3
Samples: 6
Max nTPM: 128.1
Min nTPM: 32.4
P10809_1011
32.4
P10809_1029
65.9
P10809_1048
128.1
P10809_1067
43.7
P10809_1091
62.8
P10809_1104
64.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 41.2
Samples: 4
Max nTPM: 51.3
Min nTPM: 20.1
RHH5310_R3677
51.3
RHH5218_R3590
51.0
RHH5247_R3619
42.3
RHH5276_R3648
20.1
Naive B-cell nTPM: 25.4
Samples: 4
Max nTPM: 32.5
Min nTPM: 14.1
RHH5308_R3675
25.4
RHH5216_R3588
29.5
RHH5245_R3617
14.1
RHH5274_R3646
32.5
Non-switched memory B-cell nTPM: 28.5
Samples: 4
Max nTPM: 45.9
Min nTPM: 21.0
RHH5309_R3676
45.9
RHH5217_R3589
21.0
RHH5246_R3618
24.9
RHH5275_R3647
22.1
Plasmablast nTPM: 46.4
Samples: 4
Max nTPM: 69.5
Min nTPM: 18.5
RHH5312_R3679
36.4
RHH5220_R3592
61.0
RHH5249_R3621
69.5
RHH5278_R3650
18.5
Switched memory B-cell nTPM: 31.5
Samples: 4
Max nTPM: 49.4
Min nTPM: 21.8
RHH5311_R3678
49.4
RHH5219_R3591
21.8
RHH5248_R3620
31.6
RHH5277_R3649
23.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.9
Schmiedel sample id
TPM
Naive B-cell TPM: 12.9
Samples: 91
Max TPM: 19.5
Min TPM: 8.1
B_CELL_NAIVE_1
19.5
B_CELL_NAIVE_2
19.1
B_CELL_NAIVE_3
18.3
B_CELL_NAIVE_4
18.2
B_CELL_NAIVE_5
17.0
B_CELL_NAIVE_6
16.1
B_CELL_NAIVE_7
16.1
B_CELL_NAIVE_8
16.1
B_CELL_NAIVE_9
16.0
B_CELL_NAIVE_10
15.9
B_CELL_NAIVE_11
15.9
B_CELL_NAIVE_12
15.8
B_CELL_NAIVE_13
15.7
B_CELL_NAIVE_14
15.2
B_CELL_NAIVE_15
15.1
B_CELL_NAIVE_16
15.0
B_CELL_NAIVE_17
15.0
B_CELL_NAIVE_18
14.9
B_CELL_NAIVE_19
14.8
B_CELL_NAIVE_20
14.4
B_CELL_NAIVE_21
14.3
B_CELL_NAIVE_22
14.1
B_CELL_NAIVE_23
14.1
B_CELL_NAIVE_24
14.0
B_CELL_NAIVE_25
14.0
B_CELL_NAIVE_26
13.9
B_CELL_NAIVE_27
13.9
B_CELL_NAIVE_28
13.7
B_CELL_NAIVE_29
13.7
B_CELL_NAIVE_30
13.7
B_CELL_NAIVE_31
13.6
B_CELL_NAIVE_32
13.6
B_CELL_NAIVE_33
13.5
B_CELL_NAIVE_34
13.5
B_CELL_NAIVE_35
13.5
B_CELL_NAIVE_36
13.5
B_CELL_NAIVE_37
13.4
B_CELL_NAIVE_38
13.4
B_CELL_NAIVE_39
13.4
B_CELL_NAIVE_40
13.3
B_CELL_NAIVE_41
13.2
B_CELL_NAIVE_42
13.2
B_CELL_NAIVE_43
13.1
B_CELL_NAIVE_44
13.1
B_CELL_NAIVE_45
13.1
B_CELL_NAIVE_46
13.1
B_CELL_NAIVE_47
13.0
B_CELL_NAIVE_48
12.7
B_CELL_NAIVE_49
12.6
B_CELL_NAIVE_50
12.5
B_CELL_NAIVE_51
12.4
B_CELL_NAIVE_52
12.4
B_CELL_NAIVE_53
12.4
B_CELL_NAIVE_54
12.2
B_CELL_NAIVE_55
12.2
B_CELL_NAIVE_56
12.2
B_CELL_NAIVE_57
12.1
B_CELL_NAIVE_58
12.1
B_CELL_NAIVE_59
12.1
B_CELL_NAIVE_60
12.1
B_CELL_NAIVE_61
12.0
B_CELL_NAIVE_62
12.0
B_CELL_NAIVE_63
11.8
B_CELL_NAIVE_64
11.7
B_CELL_NAIVE_65
11.7
B_CELL_NAIVE_66
11.6
B_CELL_NAIVE_67
11.5
B_CELL_NAIVE_68
11.3
B_CELL_NAIVE_69
11.3
B_CELL_NAIVE_70
11.3
B_CELL_NAIVE_71
11.1
B_CELL_NAIVE_72
11.1
B_CELL_NAIVE_73
10.8
B_CELL_NAIVE_74
10.8
B_CELL_NAIVE_75
10.7
B_CELL_NAIVE_76
10.6
B_CELL_NAIVE_77
10.5
B_CELL_NAIVE_78
10.5
B_CELL_NAIVE_79
10.4
B_CELL_NAIVE_80
10.4
B_CELL_NAIVE_81
10.2
B_CELL_NAIVE_82
10.1
B_CELL_NAIVE_83
10.0
B_CELL_NAIVE_84
9.8
B_CELL_NAIVE_85
9.8
B_CELL_NAIVE_86
9.7
B_CELL_NAIVE_87
9.6
B_CELL_NAIVE_88
9.3
B_CELL_NAIVE_89
9.2
B_CELL_NAIVE_90
8.8
B_CELL_NAIVE_91
8.1
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