A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.1
nTPM
Monaco:
179.3
nTPM
Schmiedel:
101.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.1
HPA sample
nTPM
Memory B-cell nTPM: 12.3
Samples: 6
Max nTPM: 16.9
Min nTPM: 10.1
P10809_1017
16.9
P10809_1025
10.1
P10809_1044
11.3
P10809_1063
11.5
P10809_1092
13.7
P10809_1105
10.2
Naive B-cell nTPM: 15.1
Samples: 6
Max nTPM: 17.9
Min nTPM: 12.5
P10809_1011
12.5
P10809_1029
12.8
P10809_1048
13.5
P10809_1067
17.5
P10809_1091
16.6
P10809_1104
17.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
179.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 154.7
Samples: 4
Max nTPM: 203.7
Min nTPM: 106.1
RHH5310_R3677
153.8
RHH5218_R3590
106.1
RHH5247_R3619
155.2
RHH5276_R3648
203.7
Naive B-cell nTPM: 132.6
Samples: 4
Max nTPM: 162.2
Min nTPM: 88.7
RHH5308_R3675
128.2
RHH5216_R3588
88.7
RHH5245_R3617
151.5
RHH5274_R3646
162.2
Non-switched memory B-cell nTPM: 98.8
Samples: 4
Max nTPM: 139.5
Min nTPM: 69.3
RHH5309_R3676
93.6
RHH5217_R3589
69.3
RHH5246_R3618
92.8
RHH5275_R3647
139.5
Plasmablast nTPM: 179.3
Samples: 4
Max nTPM: 241.9
Min nTPM: 115.1
RHH5312_R3679
144.3
RHH5220_R3592
115.1
RHH5249_R3621
241.9
RHH5278_R3650
215.9
Switched memory B-cell nTPM: 123.1
Samples: 4
Max nTPM: 141.5
Min nTPM: 98.9
RHH5311_R3678
98.9
RHH5219_R3591
115.6
RHH5248_R3620
136.2
RHH5277_R3649
141.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.5
Schmiedel sample id
TPM
Naive B-cell TPM: 101.5
Samples: 91
Max TPM: 212.3
Min TPM: 62.5
B_CELL_NAIVE_1
212.3
B_CELL_NAIVE_2
175.8
B_CELL_NAIVE_3
165.6
B_CELL_NAIVE_4
159.5
B_CELL_NAIVE_5
156.1
B_CELL_NAIVE_6
155.9
B_CELL_NAIVE_7
152.7
B_CELL_NAIVE_8
147.5
B_CELL_NAIVE_9
143.2
B_CELL_NAIVE_10
141.6
B_CELL_NAIVE_11
139.1
B_CELL_NAIVE_12
135.3
B_CELL_NAIVE_13
133.7
B_CELL_NAIVE_14
128.3
B_CELL_NAIVE_15
127.4
B_CELL_NAIVE_16
125.3
B_CELL_NAIVE_17
123.8
B_CELL_NAIVE_18
123.8
B_CELL_NAIVE_19
123.2
B_CELL_NAIVE_20
122.4
B_CELL_NAIVE_21
117.7
B_CELL_NAIVE_22
115.0
B_CELL_NAIVE_23
111.6
B_CELL_NAIVE_24
111.1
B_CELL_NAIVE_25
111.0
B_CELL_NAIVE_26
110.3
B_CELL_NAIVE_27
109.5
B_CELL_NAIVE_28
108.7
B_CELL_NAIVE_29
107.0
B_CELL_NAIVE_30
106.9
B_CELL_NAIVE_31
104.7
B_CELL_NAIVE_32
104.7
B_CELL_NAIVE_33
104.1
B_CELL_NAIVE_34
103.9
B_CELL_NAIVE_35
103.6
B_CELL_NAIVE_36
103.0
B_CELL_NAIVE_37
100.6
B_CELL_NAIVE_38
99.7
B_CELL_NAIVE_39
97.5
B_CELL_NAIVE_40
96.6
B_CELL_NAIVE_41
96.5
B_CELL_NAIVE_42
96.3
B_CELL_NAIVE_43
96.1
B_CELL_NAIVE_44
95.1
B_CELL_NAIVE_45
94.0
B_CELL_NAIVE_46
93.5
B_CELL_NAIVE_47
93.0
B_CELL_NAIVE_48
92.9
B_CELL_NAIVE_49
92.6
B_CELL_NAIVE_50
92.6
B_CELL_NAIVE_51
92.6
B_CELL_NAIVE_52
92.5
B_CELL_NAIVE_53
92.4
B_CELL_NAIVE_54
90.2
B_CELL_NAIVE_55
89.6
B_CELL_NAIVE_56
89.5
B_CELL_NAIVE_57
89.1
B_CELL_NAIVE_58
87.7
B_CELL_NAIVE_59
86.9
B_CELL_NAIVE_60
86.7
B_CELL_NAIVE_61
86.0
B_CELL_NAIVE_62
86.0
B_CELL_NAIVE_63
85.4
B_CELL_NAIVE_64
84.6
B_CELL_NAIVE_65
84.2
B_CELL_NAIVE_66
83.6
B_CELL_NAIVE_67
83.6
B_CELL_NAIVE_68
83.1
B_CELL_NAIVE_69
82.7
B_CELL_NAIVE_70
81.6
B_CELL_NAIVE_71
80.9
B_CELL_NAIVE_72
80.9
B_CELL_NAIVE_73
80.7
B_CELL_NAIVE_74
80.5
B_CELL_NAIVE_75
77.3
B_CELL_NAIVE_76
77.1
B_CELL_NAIVE_77
76.8
B_CELL_NAIVE_78
76.7
B_CELL_NAIVE_79
76.2
B_CELL_NAIVE_80
76.2
B_CELL_NAIVE_81
75.6
B_CELL_NAIVE_82
74.4
B_CELL_NAIVE_83
70.4
B_CELL_NAIVE_84
69.3
B_CELL_NAIVE_85
69.0
B_CELL_NAIVE_86
68.9
B_CELL_NAIVE_87
66.5
B_CELL_NAIVE_88
65.9
B_CELL_NAIVE_89
65.3
B_CELL_NAIVE_90
62.8
B_CELL_NAIVE_91
62.5
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