MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.4 nTPM
HPA Brain:126.1 nTPM
GTEx:108.4 nTPM
FANTOM5:484.7 Scaled Tags Per Million
Pig:151.1 nTPM
Mouse:37.1 nTPM
Allen mouse:20.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 126.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.9
1870 Female, age 42, unknown 136.6
2411 Female, age 72, unknown 134.2
1833 Male, age 53, unknown 133.0
1830 Male, age 51, unknown 128.0
2019 Male, age 18, unknown 121.2
2586 Male, age 75, left hemisphere 117.5
1827 Male, age 72, unknown 116.3
2666 Male, age 74, left hemisphere 106.0
2828 Female, age 72, unknown 102.2
2219 Male, age 76, both hemispheres 94.2
Dorsal raphe nucleus
nTPM: 110.1
2016 Female, age 72, unknown 120.4
2750 Male, age 76, both hemispheres 116.9
1828 Male, age 53, unknown 112.4
2047 Male, age 72, unknown 102.4
2298 Female, age 72, unknown 98.6
Inferior colliculus
nTPM: 114.5
2097 Female, age 72, unknown 119.8
1848 Female, age 42, unknown 115.7
2849 Male, age 72, unknown 113.3
1890 Male, age 53, unknown 109.0
Median raphe nucleus
nTPM: 110.1
2220 Male, age 76, midline 110.1
Periaquaductal grey, anterior
nTPM: 118.2
2502 Female, age 75, unknown 132.8
1947 Male, age 18, unknown 127.2
1795 Male, age 51, unknown 94.5
Periaquaductal grey, dorsal
nTPM: 115.1
2464 Female, age 72, unknown 122.1
2850 Male, age 76, both hemispheres 120.3
1831 Male, age 72, unknown 109.9
1840 Male, age 53, unknown 108.0
Periaquaductal grey, lateral
nTPM: 113.1
2272 Male, age 74, both hemispheres 116.3
2140 Male, age 76, both hemispheres 112.6
2053 Male, age 18, unknown 110.3
Pretectal area
nTPM: 114.3
1815 Male, age 53, unknown 127.7
2667 Female, age 75, unknown 120.5
1817 Female, age 42, unknown 120.0
1816 Male, age 51, unknown 117.2
2273 Male, age 74, both hemispheres 114.5
2825 Male, age 18, unknown 111.5
1944 Female, age 72, unknown 110.8
2316 Male, age 76, right hemisphere 109.5
2007 Male, age 72, unknown 109.3
2224 Female, age 72, unknown 108.7
2407 Male, age 75, both hemispheres 107.4
Red nucleus
nTPM: 126.1
1865 Male, age 51, unknown 141.9
1904 Male, age 53, unknown 133.4
1821 Female, age 72, unknown 133.3
1954 Female, age 42, unknown 133.1
2503 Female, age 72, unknown 133.1
2769 Male, age 72, unknown 122.4
2227 Male, age 72, unknown 122.2
2823 Male, age 76, right hemisphere 120.8
2725 Female, age 75, unknown 120.6
2785 Male, age 18, unknown 118.7
2588 Male, age 74, left hemisphere 118.1
2584 Male, age 75, left hemisphere 115.7
Substantia nigra
nTPM: 119.4
2241 Male, age 72, unknown 141.7
2409 Female, age 72, unknown 132.8
1889 Female, age 72, unknown 123.7
1916 Female, age 42, unknown 119.1
2699 Male, age 18, unknown 117.2
1941 Male, age 53, unknown 115.8
1851 Male, age 51, unknown 115.6
2590 Female, age 75, unknown 115.1
2665 Male, age 74, both hemispheres 107.1
2583 Male, age 75, right hemisphere 105.7
Superior colliculus
nTPM: 118.7
1913 Female, age 42, unknown 131.8
1839 Male, age 51, unknown 128.7
1995 Male, age 72, unknown 126.2
1895 Male, age 76, right hemisphere 120.4
2587 Male, age 74, left hemisphere 120.0
2261 Male, age 18, unknown 119.7
2664 Male, age 75, both hemispheres 118.0
2087 Female, age 72, unknown 111.7
2668 Female, age 75, unknown 106.4
1796 Male, age 53, unknown 103.8
Ventral tegmental area
nTPM: 114.7
2410 Female, age 72, unknown 126.3
2223 Female, age 72, unknown 125.4
2218 Male, age 76, both hemispheres 110.5
1915 Female, age 42, unknown 109.8
2021 Male, age 53, unknown 109.4
1942 Male, age 51, unknown 106.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 108.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.4
Samples: 183

Max nTPM: 198.1
Min nTPM: 52.4
Std nTPM: 20.8
Median nTPM: 104.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 198.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 180.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 158.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 154.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 153.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 152.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 151.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 148.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 148.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 146.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 146.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 484.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 484.7
FF:10158-103A5 76 years, female 484.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 151.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 135.6
Samples: 4

Max nTPM: 151.2
Min nTPM: 126.5
Sample A Female 133.7
Sample B Female 131.0
Sample C Male 126.5
Sample D Male 151.2
Midbrain
nTPM: 151.1
Samples: 4

Max nTPM: 192.6
Min nTPM: 129.7
Sample A Female 192.6
Sample B Female 147.7
Sample C Male 134.4
Sample D Male 129.7
Periaqueductal gray
nTPM: 138.2
Samples: 3

Max nTPM: 143.2
Min nTPM: 130.8
Sample B Female 143.2
Sample C Male 140.6
Sample D Male 130.8
Superior colliculi
nTPM: 134.6
Samples: 4

Max nTPM: 136.4
Min nTPM: 131.9
Sample A Female 135.8
Sample B Female 131.9
Sample C Male 136.4
Sample D Male 134.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 39.2
Min nTPM: 34.2
Sample A Male 34.2
Sample B Male 37.3
Sample C Female 39.2
Sample D Female 37.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.8
386235 Antisense, RP_040804_01_C08, Mouse strain C57BL/6J (56 days, male) 20.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo