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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:112.6 nTPM
HPA Brain:132.3 nTPM
GTEx:112.6 nTPM
FANTOM5:385.5 Scaled Tags Per Million
Pig:148.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 117.8
1981 Female, age 72, midline 133.6
2048 Male, age 55, midline 126.1
2816 Male, age 47, midline 113.4
2194 Female, age 79, both hemispheres 110.4
2565 Male, age 75, midline 105.2
Cervical spinal cord, dorsal horn
nTPM: 127.9
2296 Male, age 66, both hemispheres 144.8
2173 Female, age 72, unknown 141.2
2297 Male, age 75, both hemispheres 131.9
2069 Male, age 47, both hemispheres 128.2
1877 Male, age 55, unknown 116.6
2721 Male, age 90, both hemispheres 104.7
Cervical spinal cord, ventral horn
nTPM: 132.3
2480 Male, age 75, both hemispheres 157.8
2809 Male, age 90, both hemispheres 153.9
2295 Male, age 66, both hemispheres 137.3
2098 Female, age 72, unknown 129.8
2068 Male, age 55, unknown 112.1
2820 Female, age 79, both hemispheres 103.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 112.6
Samples: 204

Max nTPM: 179.7
Min nTPM: 68.7
Std nTPM: 15.8
Median nTPM: 110.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 179.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 168.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 151.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 150.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 149.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 149.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 144.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 141.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 141.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 140.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 138.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 135.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 134.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 134.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 133.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 133.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 133.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 133.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 132.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 132.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 132.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 131.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 130.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 129.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 128.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 128.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 128.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 128.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 128.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 128.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 128.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 127.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 126.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 126.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 126.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 126.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 126.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 125.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 125.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 124.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 124.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 124.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 124.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 124.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 123.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 123.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 123.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 123.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 122.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 122.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 122.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 121.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 121.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 120.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 120.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 120.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 120.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 120.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 120.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 119.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 119.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 119.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 119.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 119.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 118.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 118.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 118.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 117.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 117.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 117.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 117.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 117.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 116.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 116.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 116.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 116.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 116.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 115.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 115.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 115.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 115.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 115.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 115.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 115.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 115.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 115.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 114.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 114.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 114.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 114.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 113.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 113.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 113.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 113.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 112.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 112.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 111.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 111.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 110.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 110.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 110.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 110.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 110.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 110.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 110.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 109.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 109.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 109.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 109.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 108.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 108.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 108.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 108.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 108.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 108.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 108.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 108.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 108.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 108.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 107.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 107.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 107.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 106.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 106.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 106.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 106.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 106.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 106.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 106.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 105.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 105.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 105.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 105.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 105.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 105.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 105.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 105.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 105.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 104.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 104.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 104.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 104.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 104.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 104.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 103.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 103.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 103.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 103.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 103.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 103.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 103.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 103.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 102.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 102.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 102.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 102.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 101.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 101.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 101.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 100.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 100.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 99.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 99.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 99.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 99.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 97.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 97.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 97.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 97.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 97.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 96.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 96.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 96.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 96.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 95.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 95.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 95.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 95.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 94.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 94.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 93.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 93.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 92.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 92.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 91.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 91.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 91.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 91.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 91.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 91.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 91.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 90.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 90.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 89.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 89.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 88.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 87.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 82.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 81.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 81.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 73.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 68.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

385.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 385.5
FF:10159-103A6 76 years, female 418.9
FF:10181-103D1 60 years, female 352.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 148.2
Samples: 4

Max nTPM: 157.4
Min nTPM: 135.2
Sample A Female 135.2
Sample B Female 153.1
Sample C Male 157.4
Sample D Male 147.2
Ventral spinal cord
nTPM: 142.6
Samples: 4

Max nTPM: 157.4
Min nTPM: 135.9
Sample A Female 140.4
Sample B Female 135.9
Sample C Male 136.6
Sample D Male 157.4

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