A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
14.6
nTPM
Schmiedel:
46.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.7
P10809_1003
1.2
P10809_1020
0.8
P10809_1039
0.7
P10809_1058
0.7
P10809_1080
0.8
P10809_1107
0.9
Intermediate monocyte nTPM: 1.4
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.6
P10809_1004
1.3
P10809_1023
0.9
P10809_1042
1.0
P10809_1061
3.2
P10809_1081
0.6
P10809_1108
1.4
Non-classical monocyte nTPM: 2.4
Samples: 5
Max nTPM: 6.7
Min nTPM: 0.8
P10809_1005
1.3
P10809_1053
1.7
P10809_1072
6.7
P10809_1082
0.8
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.6
Monaco sample
nTPM
Classical monocyte nTPM: 14.7
Samples: 4
Max nTPM: 19.3
Min nTPM: 10.2
RHH5313_R3680
14.7
RHH5221_R3593
10.2
RHH5250_R3622
19.3
RHH5279_R3651
14.4
Intermediate monocyte nTPM: 10.7
Samples: 4
Max nTPM: 12.4
Min nTPM: 9.1
RHH5314_R3681
10.6
RHH5222_R3594
10.7
RHH5251_R3623
9.1
RHH5280_R3652
12.4
Non-classical monocyte nTPM: 14.3
Samples: 4
Max nTPM: 17.2
Min nTPM: 11.6
RHH5315_R3682
11.6
RHH5223_R3595
17.2
RHH5252_R3624
14.7
RHH5281_R3653
13.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.8
Schmiedel sample id
TPM
Classical monocyte TPM: 46.8
Samples: 91
Max TPM: 103.3
Min TPM: 24.9
MONOCYTES_1
103.3
MONOCYTES_2
87.3
MONOCYTES_3
87.0
MONOCYTES_4
82.7
MONOCYTES_5
82.6
MONOCYTES_6
78.3
MONOCYTES_7
77.6
MONOCYTES_8
73.3
MONOCYTES_9
69.5
MONOCYTES_10
69.3
MONOCYTES_11
68.6
MONOCYTES_12
68.3
MONOCYTES_13
66.0
MONOCYTES_14
63.5
MONOCYTES_15
63.3
MONOCYTES_16
62.8
MONOCYTES_17
61.5
MONOCYTES_18
60.9
MONOCYTES_19
60.3
MONOCYTES_20
60.2
MONOCYTES_21
58.3
MONOCYTES_22
58.1
MONOCYTES_23
57.8
MONOCYTES_24
56.4
MONOCYTES_25
54.7
MONOCYTES_26
54.5
MONOCYTES_27
53.7
MONOCYTES_28
53.6
MONOCYTES_29
53.3
MONOCYTES_30
51.5
MONOCYTES_31
50.4
MONOCYTES_32
50.4
MONOCYTES_33
50.1
MONOCYTES_34
49.0
MONOCYTES_35
48.5
MONOCYTES_36
48.3
MONOCYTES_37
47.1
MONOCYTES_38
46.2
MONOCYTES_39
46.1
MONOCYTES_40
44.7
MONOCYTES_41
44.3
MONOCYTES_42
44.0
MONOCYTES_43
43.9
MONOCYTES_44
43.6
MONOCYTES_45
42.8
MONOCYTES_46
42.1
MONOCYTES_47
42.1
MONOCYTES_48
42.0
MONOCYTES_49
42.0
MONOCYTES_50
41.8
MONOCYTES_51
41.1
MONOCYTES_52
40.2
MONOCYTES_53
39.8
MONOCYTES_54
38.9
MONOCYTES_55
38.3
MONOCYTES_56
38.0
MONOCYTES_57
38.0
MONOCYTES_58
38.0
MONOCYTES_59
37.6
MONOCYTES_60
37.5
MONOCYTES_61
37.2
MONOCYTES_62
36.8
MONOCYTES_63
36.8
MONOCYTES_64
36.3
MONOCYTES_65
35.6
MONOCYTES_66
34.6
MONOCYTES_67
34.2
MONOCYTES_68
34.1
MONOCYTES_69
33.9
MONOCYTES_70
33.8
MONOCYTES_71
33.1
MONOCYTES_72
33.1
MONOCYTES_73
32.5
MONOCYTES_74
32.4
MONOCYTES_75
31.9
MONOCYTES_76
31.2
MONOCYTES_77
31.1
MONOCYTES_78
30.0
MONOCYTES_79
29.6
MONOCYTES_80
29.2
MONOCYTES_81
29.1
MONOCYTES_82
28.2
MONOCYTES_83
27.9
MONOCYTES_84
27.6
MONOCYTES_85
27.4
MONOCYTES_86
27.2
MONOCYTES_87
27.2
MONOCYTES_88
26.8
MONOCYTES_89
26.7
MONOCYTES_90
25.6
MONOCYTES_91
24.9
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Non-classical monocyte TPM: 24.7
Samples: 90
Max TPM: 42.0
Min TPM: 17.2
M2_1
42.0
M2_2
35.4
M2_3
35.3
M2_4
34.8
M2_5
34.7
M2_6
33.5
M2_7
33.3
M2_8
32.6
M2_9
32.4
M2_10
32.4
M2_11
31.9
M2_12
30.7
M2_13
30.7
M2_14
30.6
M2_15
30.4
M2_16
30.0
M2_17
29.0
M2_18
28.1
M2_19
27.6
M2_20
27.2
M2_21
27.0
M2_22
27.0
M2_23
26.9
M2_24
26.6
M2_25
26.6
M2_26
26.4
M2_27
26.1
M2_28
26.1
M2_29
25.8
M2_30
25.6
M2_31
25.5
M2_32
25.4
M2_33
25.4
M2_34
25.3
M2_35
25.2
M2_36
25.0
M2_37
24.9
M2_38
24.9
M2_39
24.8
M2_40
24.6
M2_41
24.5
M2_42
24.5
M2_43
24.3
M2_44
24.3
M2_45
24.2
M2_46
24.1
M2_47
24.0
M2_48
24.0
M2_49
23.5
M2_50
23.5
M2_51
23.3
M2_52
23.2
M2_53
23.1
M2_54
23.0
M2_55
22.9
M2_56
22.9
M2_57
22.8
M2_58
22.8
M2_59
22.4
M2_60
22.3
M2_61
22.2
M2_62
21.8
M2_63
21.6
M2_64
21.5
M2_65
21.3
M2_66
21.3
M2_67
21.2
M2_68
21.1
M2_69
21.0
M2_70
20.8
M2_71
20.7
M2_72
20.7
M2_73
20.6
M2_74
20.3
M2_75
20.1
M2_76
20.0
M2_77
20.0
M2_78
19.9
M2_79
19.9
M2_80
19.8
M2_81
19.3
M2_82
19.2
M2_83
18.3
M2_84
18.0
M2_85
17.8
M2_86
17.8
M2_87
17.7
M2_88
17.6
M2_89
17.2
M2_90
17.2
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