A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.7
nTPM
Monaco:
34.2
nTPM
Schmiedel:
114.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.7
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 2.7
Min nTPM: 1.5
P10809_1003
2.6
P10809_1020
2.2
P10809_1039
1.5
P10809_1058
2.7
P10809_1080
1.8
P10809_1107
2.2
Intermediate monocyte nTPM: 2.1
Samples: 6
Max nTPM: 3.5
Min nTPM: 0.5
P10809_1004
3.5
P10809_1023
0.9
P10809_1042
0.5
P10809_1061
2.9
P10809_1081
2.2
P10809_1108
2.5
Non-classical monocyte nTPM: 6.7
Samples: 5
Max nTPM: 23.3
Min nTPM: 1.4
P10809_1005
1.4
P10809_1053
2.2
P10809_1072
23.3
P10809_1082
3.9
P10809_1109
2.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.2
Monaco sample
nTPM
Classical monocyte nTPM: 25.6
Samples: 4
Max nTPM: 33.1
Min nTPM: 22.4
RHH5313_R3680
33.1
RHH5221_R3593
22.5
RHH5250_R3622
22.4
RHH5279_R3651
24.5
Intermediate monocyte nTPM: 34.2
Samples: 4
Max nTPM: 57.6
Min nTPM: 23.3
RHH5314_R3681
25.7
RHH5222_R3594
30.3
RHH5251_R3623
57.6
RHH5280_R3652
23.3
Non-classical monocyte nTPM: 30.6
Samples: 4
Max nTPM: 42.0
Min nTPM: 20.6
RHH5315_R3682
20.6
RHH5223_R3595
31.3
RHH5252_R3624
42.0
RHH5281_R3653
28.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
114.1
Schmiedel sample id
TPM
Classical monocyte TPM: 92.8
Samples: 91
Max TPM: 122.8
Min TPM: 69.2
MONOCYTES_1
122.8
MONOCYTES_2
114.0
MONOCYTES_3
113.3
MONOCYTES_4
111.6
MONOCYTES_5
111.5
MONOCYTES_6
111.0
MONOCYTES_7
110.9
MONOCYTES_8
109.6
MONOCYTES_9
109.3
MONOCYTES_10
107.3
MONOCYTES_11
107.2
MONOCYTES_12
107.1
MONOCYTES_13
106.9
MONOCYTES_14
104.7
MONOCYTES_15
103.0
MONOCYTES_16
102.9
MONOCYTES_17
102.5
MONOCYTES_18
102.4
MONOCYTES_19
102.2
MONOCYTES_20
101.5
MONOCYTES_21
99.9
MONOCYTES_22
99.9
MONOCYTES_23
99.8
MONOCYTES_24
99.6
MONOCYTES_25
99.6
MONOCYTES_26
99.0
MONOCYTES_27
98.9
MONOCYTES_28
98.1
MONOCYTES_29
98.0
MONOCYTES_30
97.7
MONOCYTES_31
97.1
MONOCYTES_32
96.8
MONOCYTES_33
96.4
MONOCYTES_34
96.3
MONOCYTES_35
96.2
MONOCYTES_36
96.2
MONOCYTES_37
95.8
MONOCYTES_38
95.7
MONOCYTES_39
95.4
MONOCYTES_40
95.2
MONOCYTES_41
95.1
MONOCYTES_42
93.7
MONOCYTES_43
93.0
MONOCYTES_44
92.6
MONOCYTES_45
92.5
MONOCYTES_46
92.1
MONOCYTES_47
92.0
MONOCYTES_48
91.8
MONOCYTES_49
91.5
MONOCYTES_50
91.4
MONOCYTES_51
91.3
MONOCYTES_52
91.2
MONOCYTES_53
90.9
MONOCYTES_54
90.8
MONOCYTES_55
90.8
MONOCYTES_56
89.6
MONOCYTES_57
88.6
MONOCYTES_58
88.5
MONOCYTES_59
88.5
MONOCYTES_60
88.4
MONOCYTES_61
87.7
MONOCYTES_62
87.4
MONOCYTES_63
87.4
MONOCYTES_64
86.9
MONOCYTES_65
86.7
MONOCYTES_66
86.4
MONOCYTES_67
86.3
MONOCYTES_68
86.2
MONOCYTES_69
86.0
MONOCYTES_70
85.4
MONOCYTES_71
85.2
MONOCYTES_72
84.7
MONOCYTES_73
83.8
MONOCYTES_74
83.6
MONOCYTES_75
83.2
MONOCYTES_76
81.9
MONOCYTES_77
81.8
MONOCYTES_78
81.4
MONOCYTES_79
81.2
MONOCYTES_80
80.0
MONOCYTES_81
78.0
MONOCYTES_82
77.9
MONOCYTES_83
76.3
MONOCYTES_84
75.7
MONOCYTES_85
75.3
MONOCYTES_86
74.9
MONOCYTES_87
73.1
MONOCYTES_88
73.0
MONOCYTES_89
70.4
MONOCYTES_90
69.2
MONOCYTES_91
69.2
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Non-classical monocyte TPM: 114.1
Samples: 90
Max TPM: 148.2
Min TPM: 81.1
M2_1
148.2
M2_2
144.9
M2_3
141.9
M2_4
139.7
M2_5
139.3
M2_6
137.0
M2_7
135.2
M2_8
132.1
M2_9
132.1
M2_10
130.6
M2_11
130.0
M2_12
127.9
M2_13
126.7
M2_14
126.3
M2_15
126.2
M2_16
125.7
M2_17
124.6
M2_18
124.4
M2_19
123.9
M2_20
122.8
M2_21
122.7
M2_22
122.6
M2_23
122.3
M2_24
122.0
M2_25
121.6
M2_26
120.3
M2_27
119.8
M2_28
118.9
M2_29
118.7
M2_30
118.3
M2_31
118.2
M2_32
118.1
M2_33
118.1
M2_34
117.5
M2_35
117.5
M2_36
117.4
M2_37
117.2
M2_38
116.6
M2_39
115.6
M2_40
115.4
M2_41
115.4
M2_42
115.2
M2_43
114.4
M2_44
114.2
M2_45
114.1
M2_46
113.8
M2_47
113.7
M2_48
113.5
M2_49
112.9
M2_50
112.7
M2_51
112.0
M2_52
111.8
M2_53
111.5
M2_54
111.2
M2_55
111.1
M2_56
110.3
M2_57
110.3
M2_58
108.8
M2_59
107.4
M2_60
107.3
M2_61
106.7
M2_62
106.2
M2_63
106.2
M2_64
106.1
M2_65
106.1
M2_66
105.9
M2_67
105.3
M2_68
105.2
M2_69
103.2
M2_70
103.0
M2_71
102.7
M2_72
102.6
M2_73
102.5
M2_74
102.2
M2_75
101.5
M2_76
100.7
M2_77
100.6
M2_78
100.4
M2_79
100.2
M2_80
99.9
M2_81
99.2
M2_82
98.6
M2_83
98.4
M2_84
97.3
M2_85
95.5
M2_86
95.1
M2_87
93.2
M2_88
93.0
M2_89
87.3
M2_90
81.1
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