MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.2 nTPM
HPA Brain:71.0 nTPM
GTEx:22.2 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Mouse:28.7 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.5
2586 Male, age 75, left hemisphere 52.2
2666 Male, age 74, left hemisphere 52.0
2219 Male, age 76, both hemispheres 50.2
1827 Male, age 72, unknown 46.4
2828 Female, age 72, unknown 44.4
2411 Female, age 72, unknown 35.2
2019 Male, age 18, unknown 34.7
1833 Male, age 53, unknown 34.6
1870 Female, age 42, unknown 33.8
1830 Male, age 51, unknown 31.5
Dorsal raphe nucleus
nTPM: 37.3
2298 Female, age 72, unknown 46.2
2047 Male, age 72, unknown 40.9
2750 Male, age 76, both hemispheres 35.8
1828 Male, age 53, unknown 33.4
2016 Female, age 72, unknown 30.4
Inferior colliculus
nTPM: 46.5
2097 Female, age 72, unknown 52.4
1848 Female, age 42, unknown 48.8
2849 Male, age 72, unknown 47.9
1890 Male, age 53, unknown 36.7
Median raphe nucleus
nTPM: 42.5
2220 Male, age 76, midline 42.5
Periaquaductal grey, anterior
nTPM: 71.0
2502 Female, age 75, unknown 109.5
1795 Male, age 51, unknown 53.4
1947 Male, age 18, unknown 50.2
Periaquaductal grey, dorsal
nTPM: 39.3
1840 Male, age 53, unknown 47.5
2464 Female, age 72, unknown 44.3
1831 Male, age 72, unknown 33.4
2850 Male, age 76, both hemispheres 31.9
Periaquaductal grey, lateral
nTPM: 30.4
2140 Male, age 76, both hemispheres 36.6
2053 Male, age 18, unknown 31.0
2272 Male, age 74, both hemispheres 23.5
Pretectal area
nTPM: 44.0
1816 Male, age 51, unknown 62.7
2007 Male, age 72, unknown 57.1
1944 Female, age 72, unknown 54.9
1817 Female, age 42, unknown 53.4
2224 Female, age 72, unknown 45.4
2667 Female, age 75, unknown 45.4
1815 Male, age 53, unknown 44.9
2825 Male, age 18, unknown 39.8
2316 Male, age 76, right hemisphere 33.3
2407 Male, age 75, both hemispheres 28.5
2273 Male, age 74, both hemispheres 19.0
Red nucleus
nTPM: 22.6
2785 Male, age 18, unknown 37.3
2584 Male, age 75, left hemisphere 35.2
2588 Male, age 74, left hemisphere 25.4
2769 Male, age 72, unknown 24.1
2227 Male, age 72, unknown 24.0
1954 Female, age 42, unknown 20.6
2823 Male, age 76, right hemisphere 20.2
2503 Female, age 72, unknown 19.8
1821 Female, age 72, unknown 18.5
1865 Male, age 51, unknown 17.2
1904 Male, age 53, unknown 16.7
2725 Female, age 75, unknown 12.6
Substantia nigra
nTPM: 34.5
2665 Male, age 74, both hemispheres 55.5
1941 Male, age 53, unknown 46.4
1889 Female, age 72, unknown 44.5
1916 Female, age 42, unknown 39.1
1851 Male, age 51, unknown 36.8
2241 Male, age 72, unknown 28.7
2699 Male, age 18, unknown 27.3
2409 Female, age 72, unknown 22.6
2590 Female, age 75, unknown 22.2
2583 Male, age 75, right hemisphere 21.7
Superior colliculus
nTPM: 43.6
2668 Female, age 75, unknown 58.2
1796 Male, age 53, unknown 51.6
2087 Female, age 72, unknown 50.5
2664 Male, age 75, both hemispheres 50.1
1895 Male, age 76, right hemisphere 47.2
2261 Male, age 18, unknown 47.0
1839 Male, age 51, unknown 42.0
2587 Male, age 74, left hemisphere 36.9
1913 Female, age 42, unknown 26.9
1995 Male, age 72, unknown 25.5
Ventral tegmental area
nTPM: 40.5
1942 Male, age 51, unknown 48.5
2218 Male, age 76, both hemispheres 48.2
1915 Female, age 42, unknown 40.3
2223 Female, age 72, unknown 37.5
2021 Male, age 53, unknown 37.0
2410 Female, age 72, unknown 31.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.2
Samples: 183

Max nTPM: 138.8
Min nTPM: 1.4
Std nTPM: 17.8
Median nTPM: 19.5
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 138.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 102.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 94.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 91.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 57.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 56.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 47.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 44.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 44.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 44.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 33.1
Min nTPM: 26.0
Sample A Male 33.1
Sample B Male 26.7
Sample C Female 26.0
Sample D Female 29.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69735670 Antisense, RP_050503_03_C06, Mouse strain C57BL/6J (56 days, male) 2.5

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