A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.3
nTPM
Monaco:
111.7
nTPM
Schmiedel:
211.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.3
HPA sample
nTPM
NK-cell nTPM: 5.3
Samples: 6
Max nTPM: 9.0
Min nTPM: 1.6
P10809_1013
9.0
P10809_1033
2.9
P10809_1052
3.9
P10809_1071
1.6
P10809_1093
7.9
P10809_1103
6.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
111.7
Monaco sample
nTPM
NK-cell nTPM: 111.7
Samples: 4
Max nTPM: 127.2
Min nTPM: 95.1
RHH5316_R3683
95.1
RHH5224_R3596
111.0
RHH5253_R3625
127.2
RHH5282_R3654
113.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
211.1
Schmiedel sample id
TPM
NK-cell TPM: 211.1
Samples: 90
Max TPM: 342.2
Min TPM: 136.5
NK_1
342.2
NK_2
310.8
NK_3
285.4
NK_4
279.5
NK_5
277.1
NK_6
276.4
NK_7
271.1
NK_8
268.5
NK_9
262.3
NK_10
258.2
NK_11
256.3
NK_12
255.1
NK_13
253.4
NK_14
253.3
NK_15
252.5
NK_16
252.0
NK_17
250.0
NK_18
248.7
NK_19
246.4
NK_20
246.2
NK_21
244.6
NK_22
244.1
NK_23
242.8
NK_24
237.1
NK_25
234.4
NK_26
233.4
NK_27
231.8
NK_28
229.9
NK_29
229.7
NK_30
227.3
NK_31
225.3
NK_32
224.0
NK_33
222.7
NK_34
221.3
NK_35
220.6
NK_36
219.8
NK_37
219.5
NK_38
216.6
NK_39
214.4
NK_40
213.2
NK_41
212.6
NK_42
211.9
NK_43
211.5
NK_44
210.9
NK_45
208.5
NK_46
206.0
NK_47
204.6
NK_48
204.5
NK_49
203.1
NK_50
203.1
NK_51
202.1
NK_52
200.6
NK_53
199.5
NK_54
197.7
NK_55
197.6
NK_56
195.2
NK_57
193.5
NK_58
192.6
NK_59
192.4
NK_60
191.7
NK_61
191.0
NK_62
190.2
NK_63
190.0
NK_64
189.6
NK_65
188.0
NK_66
187.7
NK_67
184.8
NK_68
182.6
NK_69
179.9
NK_70
179.7
NK_71
178.9
NK_72
176.9
NK_73
175.7
NK_74
173.7
NK_75
173.2
NK_76
172.0
NK_77
168.6
NK_78
168.4
NK_79
163.8
NK_80
159.1
NK_81
157.5
NK_82
156.8
NK_83
155.3
NK_84
152.9
NK_85
152.2
NK_86
152.0
NK_87
147.9
NK_88
138.8
NK_89
137.6
NK_90
136.5
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