A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.4
nTPM
Monaco:
87.3
nTPM
Schmiedel:
28.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.4
HPA sample
nTPM
Classical monocyte nTPM: 20.2
Samples: 6
Max nTPM: 30.2
Min nTPM: 12.1
P10809_1003
20.9
P10809_1020
20.3
P10809_1039
18.2
P10809_1058
30.2
P10809_1080
12.1
P10809_1107
19.6
Intermediate monocyte nTPM: 16.6
Samples: 6
Max nTPM: 23.2
Min nTPM: 9.6
P10809_1004
23.2
P10809_1023
14.7
P10809_1042
18.9
P10809_1061
17.5
P10809_1081
15.9
P10809_1108
9.6
Non-classical monocyte nTPM: 23.4
Samples: 5
Max nTPM: 36.9
Min nTPM: 14.6
P10809_1005
22.0
P10809_1053
19.8
P10809_1072
36.9
P10809_1082
23.8
P10809_1109
14.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.3
Monaco sample
nTPM
Classical monocyte nTPM: 62.5
Samples: 4
Max nTPM: 79.0
Min nTPM: 48.8
RHH5313_R3680
52.6
RHH5221_R3593
79.0
RHH5250_R3622
48.8
RHH5279_R3651
69.6
Intermediate monocyte nTPM: 54.2
Samples: 4
Max nTPM: 76.2
Min nTPM: 39.2
RHH5314_R3681
50.6
RHH5222_R3594
76.2
RHH5251_R3623
39.2
RHH5280_R3652
50.6
Non-classical monocyte nTPM: 87.2
Samples: 4
Max nTPM: 123.8
Min nTPM: 66.6
RHH5315_R3682
87.2
RHH5223_R3595
123.8
RHH5252_R3624
66.6
RHH5281_R3653
71.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.9
Schmiedel sample id
TPM
Classical monocyte TPM: 16.8
Samples: 91
Max TPM: 23.8
Min TPM: 11.6
MONOCYTES_1
23.8
MONOCYTES_2
22.9
MONOCYTES_3
22.2
MONOCYTES_4
21.9
MONOCYTES_5
21.9
MONOCYTES_6
21.6
MONOCYTES_7
21.3
MONOCYTES_8
21.3
MONOCYTES_9
21.2
MONOCYTES_10
21.1
MONOCYTES_11
20.7
MONOCYTES_12
20.5
MONOCYTES_13
20.4
MONOCYTES_14
20.4
MONOCYTES_15
19.7
MONOCYTES_16
19.7
MONOCYTES_17
19.4
MONOCYTES_18
19.1
MONOCYTES_19
19.1
MONOCYTES_20
19.1
MONOCYTES_21
18.8
MONOCYTES_22
18.7
MONOCYTES_23
18.7
MONOCYTES_24
18.5
MONOCYTES_25
18.2
MONOCYTES_26
18.2
MONOCYTES_27
18.1
MONOCYTES_28
17.8
MONOCYTES_29
17.7
MONOCYTES_30
17.6
MONOCYTES_31
17.6
MONOCYTES_32
17.6
MONOCYTES_33
17.5
MONOCYTES_34
17.4
MONOCYTES_35
17.3
MONOCYTES_36
17.2
MONOCYTES_37
17.2
MONOCYTES_38
17.0
MONOCYTES_39
17.0
MONOCYTES_40
17.0
MONOCYTES_41
16.9
MONOCYTES_42
16.8
MONOCYTES_43
16.7
MONOCYTES_44
16.6
MONOCYTES_45
16.6
MONOCYTES_46
16.6
MONOCYTES_47
16.3
MONOCYTES_48
16.3
MONOCYTES_49
16.3
MONOCYTES_50
16.3
MONOCYTES_51
16.1
MONOCYTES_52
16.1
MONOCYTES_53
15.9
MONOCYTES_54
15.8
MONOCYTES_55
15.6
MONOCYTES_56
15.6
MONOCYTES_57
15.4
MONOCYTES_58
15.3
MONOCYTES_59
15.3
MONOCYTES_60
15.3
MONOCYTES_61
15.3
MONOCYTES_62
15.2
MONOCYTES_63
15.2
MONOCYTES_64
15.1
MONOCYTES_65
15.0
MONOCYTES_66
14.9
MONOCYTES_67
14.9
MONOCYTES_68
14.8
MONOCYTES_69
14.8
MONOCYTES_70
14.8
MONOCYTES_71
14.7
MONOCYTES_72
14.6
MONOCYTES_73
14.6
MONOCYTES_74
14.4
MONOCYTES_75
14.3
MONOCYTES_76
14.0
MONOCYTES_77
13.9
MONOCYTES_78
13.8
MONOCYTES_79
13.7
MONOCYTES_80
13.5
MONOCYTES_81
13.4
MONOCYTES_82
13.2
MONOCYTES_83
13.2
MONOCYTES_84
13.1
MONOCYTES_85
13.0
MONOCYTES_86
12.8
MONOCYTES_87
12.5
MONOCYTES_88
12.5
MONOCYTES_89
12.4
MONOCYTES_90
11.7
MONOCYTES_91
11.6
Show allShow less
Non-classical monocyte TPM: 28.9
Samples: 90
Max TPM: 43.0
Min TPM: 16.2
M2_1
43.0
M2_2
38.9
M2_3
36.6
M2_4
35.0
M2_5
34.7
M2_6
34.5
M2_7
34.4
M2_8
34.0
M2_9
33.7
M2_10
33.6
M2_11
33.5
M2_12
33.5
M2_13
33.5
M2_14
33.3
M2_15
33.0
M2_16
32.8
M2_17
32.7
M2_18
32.6
M2_19
32.3
M2_20
32.3
M2_21
32.2
M2_22
31.9
M2_23
31.8
M2_24
31.8
M2_25
31.7
M2_26
31.5
M2_27
31.4
M2_28
31.3
M2_29
31.1
M2_30
30.9
M2_31
30.7
M2_32
30.7
M2_33
30.5
M2_34
30.3
M2_35
30.2
M2_36
30.1
M2_37
29.9
M2_38
29.7
M2_39
29.7
M2_40
29.7
M2_41
29.5
M2_42
29.4
M2_43
29.4
M2_44
29.3
M2_45
29.3
M2_46
29.1
M2_47
28.8
M2_48
28.7
M2_49
28.6
M2_50
28.6
M2_51
28.0
M2_52
27.9
M2_53
27.7
M2_54
27.6
M2_55
27.3
M2_56
27.1
M2_57
27.1
M2_58
27.0
M2_59
26.9
M2_60
26.8
M2_61
26.8
M2_62
26.8
M2_63
26.7
M2_64
26.6
M2_65
26.3
M2_66
26.3
M2_67
26.3
M2_68
25.9
M2_69
25.9
M2_70
25.6
M2_71
25.6
M2_72
25.5
M2_73
25.2
M2_74
25.1
M2_75
25.0
M2_76
25.0
M2_77
24.8
M2_78
24.5
M2_79
24.3
M2_80
24.2
M2_81
24.0
M2_82
23.9
M2_83
23.9
M2_84
23.6
M2_85
23.4
M2_86
23.2
M2_87
22.2
M2_88
21.8
M2_89
21.2
M2_90
16.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
