A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
109.8
nTPM
Monaco:
129.1
nTPM
Schmiedel:
59.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.8
HPA sample
nTPM
Classical monocyte nTPM: 85.7
Samples: 6
Max nTPM: 106.1
Min nTPM: 61.0
P10809_1003
92.4
P10809_1020
105.4
P10809_1039
106.1
P10809_1058
61.0
P10809_1080
79.3
P10809_1107
70.1
Intermediate monocyte nTPM: 98.1
Samples: 6
Max nTPM: 136.6
Min nTPM: 65.4
P10809_1004
80.0
P10809_1023
136.6
P10809_1042
110.3
P10809_1061
65.4
P10809_1081
77.9
P10809_1108
118.2
Non-classical monocyte nTPM: 109.8
Samples: 5
Max nTPM: 134.0
Min nTPM: 81.1
P10809_1005
94.2
P10809_1053
134.0
P10809_1072
129.5
P10809_1082
81.1
P10809_1109
110.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
129.1
Monaco sample
nTPM
Classical monocyte nTPM: 120.5
Samples: 4
Max nTPM: 133.7
Min nTPM: 104.7
RHH5313_R3680
133.7
RHH5221_R3593
119.9
RHH5250_R3622
104.7
RHH5279_R3651
123.5
Intermediate monocyte nTPM: 114.8
Samples: 4
Max nTPM: 141.3
Min nTPM: 77.8
RHH5314_R3681
117.9
RHH5222_R3594
77.8
RHH5251_R3623
122.1
RHH5280_R3652
141.3
Non-classical monocyte nTPM: 129.1
Samples: 4
Max nTPM: 181.2
Min nTPM: 94.5
RHH5315_R3682
130.3
RHH5223_R3595
94.5
RHH5252_R3624
110.5
RHH5281_R3653
181.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.6
Schmiedel sample id
TPM
Classical monocyte TPM: 45.7
Samples: 91
Max TPM: 59.7
Min TPM: 30.4
MONOCYTES_1
59.7
MONOCYTES_2
57.9
MONOCYTES_3
57.7
MONOCYTES_4
57.3
MONOCYTES_5
55.7
MONOCYTES_6
55.3
MONOCYTES_7
55.3
MONOCYTES_8
55.2
MONOCYTES_9
55.0
MONOCYTES_10
54.5
MONOCYTES_11
54.2
MONOCYTES_12
53.2
MONOCYTES_13
53.0
MONOCYTES_14
52.9
MONOCYTES_15
52.9
MONOCYTES_16
52.7
MONOCYTES_17
52.5
MONOCYTES_18
51.7
MONOCYTES_19
51.2
MONOCYTES_20
51.0
MONOCYTES_21
50.9
MONOCYTES_22
50.8
MONOCYTES_23
50.6
MONOCYTES_24
50.6
MONOCYTES_25
50.4
MONOCYTES_26
50.4
MONOCYTES_27
50.1
MONOCYTES_28
49.8
MONOCYTES_29
49.6
MONOCYTES_30
49.4
MONOCYTES_31
49.1
MONOCYTES_32
48.8
MONOCYTES_33
48.8
MONOCYTES_34
48.8
MONOCYTES_35
47.9
MONOCYTES_36
47.1
MONOCYTES_37
47.0
MONOCYTES_38
46.9
MONOCYTES_39
46.6
MONOCYTES_40
46.3
MONOCYTES_41
46.2
MONOCYTES_42
46.0
MONOCYTES_43
45.8
MONOCYTES_44
45.6
MONOCYTES_45
45.4
MONOCYTES_46
45.3
MONOCYTES_47
45.3
MONOCYTES_48
45.1
MONOCYTES_49
44.9
MONOCYTES_50
44.8
MONOCYTES_51
44.8
MONOCYTES_52
44.7
MONOCYTES_53
44.0
MONOCYTES_54
43.7
MONOCYTES_55
43.6
MONOCYTES_56
43.6
MONOCYTES_57
43.6
MONOCYTES_58
43.5
MONOCYTES_59
42.8
MONOCYTES_60
42.8
MONOCYTES_61
42.0
MONOCYTES_62
42.0
MONOCYTES_63
41.6
MONOCYTES_64
41.3
MONOCYTES_65
41.3
MONOCYTES_66
41.1
MONOCYTES_67
41.1
MONOCYTES_68
40.9
MONOCYTES_69
40.7
MONOCYTES_70
40.6
MONOCYTES_71
40.5
MONOCYTES_72
40.4
MONOCYTES_73
40.0
MONOCYTES_74
39.5
MONOCYTES_75
39.5
MONOCYTES_76
39.3
MONOCYTES_77
39.2
MONOCYTES_78
39.2
MONOCYTES_79
38.9
MONOCYTES_80
38.8
MONOCYTES_81
38.4
MONOCYTES_82
38.0
MONOCYTES_83
37.7
MONOCYTES_84
37.4
MONOCYTES_85
36.4
MONOCYTES_86
36.2
MONOCYTES_87
35.9
MONOCYTES_88
35.4
MONOCYTES_89
34.1
MONOCYTES_90
32.5
MONOCYTES_91
30.4
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Non-classical monocyte TPM: 59.6
Samples: 90
Max TPM: 76.3
Min TPM: 40.5
M2_1
76.3
M2_2
74.1
M2_3
74.1
M2_4
73.4
M2_5
71.7
M2_6
71.6
M2_7
70.9
M2_8
70.3
M2_9
69.8
M2_10
69.5
M2_11
69.3
M2_12
67.9
M2_13
67.7
M2_14
66.9
M2_15
66.8
M2_16
66.4
M2_17
66.2
M2_18
65.6
M2_19
65.3
M2_20
65.0
M2_21
64.9
M2_22
64.9
M2_23
64.9
M2_24
64.8
M2_25
64.8
M2_26
64.7
M2_27
64.6
M2_28
64.5
M2_29
64.1
M2_30
64.1
M2_31
63.5
M2_32
62.3
M2_33
62.2
M2_34
62.2
M2_35
61.5
M2_36
61.5
M2_37
61.1
M2_38
61.0
M2_39
60.8
M2_40
60.2
M2_41
59.9
M2_42
59.9
M2_43
59.7
M2_44
59.7
M2_45
59.4
M2_46
59.2
M2_47
59.1
M2_48
59.0
M2_49
58.6
M2_50
58.2
M2_51
58.2
M2_52
58.0
M2_53
58.0
M2_54
57.8
M2_55
57.4
M2_56
57.3
M2_57
57.2
M2_58
56.7
M2_59
56.7
M2_60
56.2
M2_61
56.0
M2_62
56.0
M2_63
55.4
M2_64
55.1
M2_65
55.1
M2_66
54.7
M2_67
54.3
M2_68
54.2
M2_69
54.2
M2_70
54.1
M2_71
53.9
M2_72
53.8
M2_73
53.8
M2_74
53.2
M2_75
52.7
M2_76
52.3
M2_77
52.1
M2_78
51.9
M2_79
51.8
M2_80
51.6
M2_81
51.0
M2_82
50.5
M2_83
49.2
M2_84
48.7
M2_85
48.1
M2_86
47.9
M2_87
47.9
M2_88
43.5
M2_89
43.0
M2_90
40.5
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