A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
16.4
nTPM
Schmiedel:
41.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
Classical monocyte nTPM: 0.6
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.2
P10809_1003
1.1
P10809_1020
0.3
P10809_1039
0.2
P10809_1058
0.8
P10809_1080
0.6
P10809_1107
0.3
Intermediate monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.0
P10809_1004
0.3
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
0.7
P10809_1081
0.3
P10809_1108
0.0
Non-classical monocyte nTPM: 0.3
Samples: 5
Max nTPM: 0.7
Min nTPM: 0.0
P10809_1005
0.7
P10809_1053
0.5
P10809_1072
0.0
P10809_1082
0.4
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.4
Monaco sample
nTPM
Classical monocyte nTPM: 16.4
Samples: 4
Max nTPM: 17.3
Min nTPM: 15.1
RHH5313_R3680
17.3
RHH5221_R3593
17.3
RHH5250_R3622
15.8
RHH5279_R3651
15.1
Intermediate monocyte nTPM: 13.7
Samples: 4
Max nTPM: 14.6
Min nTPM: 12.0
RHH5314_R3681
13.9
RHH5222_R3594
14.3
RHH5251_R3623
12.0
RHH5280_R3652
14.6
Non-classical monocyte nTPM: 14.7
Samples: 4
Max nTPM: 18.2
Min nTPM: 8.9
RHH5315_R3682
14.9
RHH5223_R3595
18.2
RHH5252_R3624
16.6
RHH5281_R3653
8.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.1
Schmiedel sample id
TPM
Classical monocyte TPM: 41.0
Samples: 91
Max TPM: 65.4
Min TPM: 28.5
MONOCYTES_1
65.4
MONOCYTES_2
64.2
MONOCYTES_3
62.9
MONOCYTES_4
56.8
MONOCYTES_5
56.1
MONOCYTES_6
54.9
MONOCYTES_7
54.1
MONOCYTES_8
51.9
MONOCYTES_9
50.5
MONOCYTES_10
49.9
MONOCYTES_11
49.8
MONOCYTES_12
49.7
MONOCYTES_13
49.4
MONOCYTES_14
49.3
MONOCYTES_15
48.8
MONOCYTES_16
47.7
MONOCYTES_17
47.1
MONOCYTES_18
46.7
MONOCYTES_19
46.6
MONOCYTES_20
46.4
MONOCYTES_21
46.4
MONOCYTES_22
45.7
MONOCYTES_23
44.7
MONOCYTES_24
44.2
MONOCYTES_25
44.1
MONOCYTES_26
43.6
MONOCYTES_27
43.5
MONOCYTES_28
43.2
MONOCYTES_29
43.2
MONOCYTES_30
42.9
MONOCYTES_31
42.8
MONOCYTES_32
42.7
MONOCYTES_33
41.9
MONOCYTES_34
41.9
MONOCYTES_35
41.7
MONOCYTES_36
41.3
MONOCYTES_37
41.2
MONOCYTES_38
40.8
MONOCYTES_39
40.3
MONOCYTES_40
39.9
MONOCYTES_41
39.8
MONOCYTES_42
39.8
MONOCYTES_43
39.7
MONOCYTES_44
39.2
MONOCYTES_45
38.9
MONOCYTES_46
38.7
MONOCYTES_47
38.6
MONOCYTES_48
38.6
MONOCYTES_49
38.5
MONOCYTES_50
38.2
MONOCYTES_51
38.1
MONOCYTES_52
37.7
MONOCYTES_53
37.7
MONOCYTES_54
37.6
MONOCYTES_55
37.6
MONOCYTES_56
37.5
MONOCYTES_57
37.4
MONOCYTES_58
37.4
MONOCYTES_59
37.3
MONOCYTES_60
37.3
MONOCYTES_61
36.9
MONOCYTES_62
36.7
MONOCYTES_63
36.5
MONOCYTES_64
36.4
MONOCYTES_65
36.4
MONOCYTES_66
36.4
MONOCYTES_67
36.3
MONOCYTES_68
36.2
MONOCYTES_69
36.2
MONOCYTES_70
36.2
MONOCYTES_71
36.0
MONOCYTES_72
35.8
MONOCYTES_73
35.8
MONOCYTES_74
35.6
MONOCYTES_75
35.5
MONOCYTES_76
35.2
MONOCYTES_77
34.9
MONOCYTES_78
34.5
MONOCYTES_79
34.0
MONOCYTES_80
33.9
MONOCYTES_81
33.3
MONOCYTES_82
33.2
MONOCYTES_83
33.1
MONOCYTES_84
32.7
MONOCYTES_85
32.4
MONOCYTES_86
31.8
MONOCYTES_87
31.8
MONOCYTES_88
31.8
MONOCYTES_89
31.0
MONOCYTES_90
30.6
MONOCYTES_91
28.5
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Non-classical monocyte TPM: 36.0
Samples: 90
Max TPM: 46.1
Min TPM: 28.3
M2_1
46.1
M2_2
45.6
M2_3
45.4
M2_4
45.2
M2_5
42.7
M2_6
42.6
M2_7
42.5
M2_8
42.0
M2_9
41.4
M2_10
41.0
M2_11
40.9
M2_12
40.8
M2_13
40.6
M2_14
40.4
M2_15
40.3
M2_16
40.2
M2_17
39.8
M2_18
39.8
M2_19
39.8
M2_20
39.6
M2_21
39.1
M2_22
39.1
M2_23
38.9
M2_24
38.8
M2_25
38.7
M2_26
38.6
M2_27
38.4
M2_28
38.4
M2_29
38.3
M2_30
38.3
M2_31
38.3
M2_32
38.0
M2_33
37.9
M2_34
37.8
M2_35
37.8
M2_36
37.7
M2_37
37.7
M2_38
37.3
M2_39
37.2
M2_40
37.0
M2_41
36.8
M2_42
36.4
M2_43
36.4
M2_44
36.4
M2_45
36.3
M2_46
36.3
M2_47
36.3
M2_48
36.2
M2_49
35.9
M2_50
35.7
M2_51
35.7
M2_52
35.1
M2_53
35.0
M2_54
34.7
M2_55
34.7
M2_56
34.5
M2_57
34.4
M2_58
34.3
M2_59
34.1
M2_60
34.0
M2_61
33.7
M2_62
33.4
M2_63
33.2
M2_64
32.8
M2_65
32.2
M2_66
32.1
M2_67
31.7
M2_68
31.7
M2_69
31.7
M2_70
31.7
M2_71
31.5
M2_72
31.3
M2_73
31.1
M2_74
31.1
M2_75
31.0
M2_76
30.8
M2_77
30.8
M2_78
30.6
M2_79
30.4
M2_80
30.4
M2_81
30.4
M2_82
30.0
M2_83
29.7
M2_84
29.7
M2_85
29.6
M2_86
29.4
M2_87
29.1
M2_88
28.9
M2_89
28.4
M2_90
28.3
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