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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:298.5 nTPM
HPA Brain:97.5 nTPM
GTEx:298.5 nTPM
FANTOM5:444.8 Scaled Tags Per Million
Pig:106.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 76.3
2565 Male, age 75, midline 87.5
1981 Female, age 72, midline 87.3
2048 Male, age 55, midline 77.9
2194 Female, age 79, both hemispheres 68.3
2816 Male, age 47, midline 60.3
Cervical spinal cord, dorsal horn
nTPM: 81.6
2069 Male, age 47, both hemispheres 97.7
2296 Male, age 66, both hemispheres 96.0
2173 Female, age 72, unknown 93.6
2297 Male, age 75, both hemispheres 75.6
1877 Male, age 55, unknown 74.9
2721 Male, age 90, both hemispheres 52.0
Cervical spinal cord, ventral horn
nTPM: 97.5
2480 Male, age 75, both hemispheres 140.8
2809 Male, age 90, both hemispheres 120.8
2098 Female, age 72, unknown 91.6
2068 Male, age 55, unknown 91.5
2295 Male, age 66, both hemispheres 81.6
2820 Female, age 79, both hemispheres 59.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

298.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 298.5
Samples: 204

Max nTPM: 609.0
Min nTPM: 132.6
Std nTPM: 98.5
Median nTPM: 277.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 609.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 570.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 566.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 543.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 537.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 534.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 533.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 494.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 491.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 477.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 477.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 476.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 473.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 472.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 469.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 465.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 463.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 457.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 456.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 449.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 443.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 443.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 439.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 436.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 434.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 431.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 429.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 429.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 426.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 424.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 421.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 409.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 408.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 403.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 399.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 395.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 394.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 393.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 391.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 384.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 384.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 381.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 372.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 371.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 369.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 367.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 366.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 364.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 363.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 362.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 361.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 351.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 351.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 349.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 347.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 346.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 346.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 344.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 341.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 335.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 334.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 334.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 332.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 332.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 331.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 330.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 329.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 329.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 322.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 320.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 319.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 316.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 314.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 314.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 311.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 311.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 310.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 310.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 306.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 305.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 305.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 305.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 305.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 303.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 301.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 300.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 300.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 296.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 293.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 293.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 293.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 292.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 286.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 286.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 286.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 285.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 284.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 283.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 283.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 279.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 279.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 278.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 277.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 276.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 275.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 274.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 273.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 271.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 270.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 270.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 269.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 269.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 269.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 269.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 268.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 267.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 266.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 266.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 265.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 263.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 258.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 257.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 249.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 249.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 246.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 246.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 245.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 244.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 242.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 241.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 241.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 239.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 239.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 237.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 235.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 234.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 234.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 234.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 232.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 231.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 230.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 229.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 229.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 229.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 228.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 228.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 227.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 226.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 225.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 225.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 224.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 224.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 223.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 223.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 222.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 222.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 222.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 221.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 221.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 219.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 218.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 216.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 215.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 215.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 212.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 212.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 211.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 209.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 209.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 208.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 207.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 206.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 206.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 206.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 205.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 204.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 203.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 199.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 198.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 194.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 194.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 194.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 192.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 190.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 190.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 187.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 186.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 183.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 180.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 180.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 177.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 174.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 174.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 172.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 171.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 169.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 168.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 165.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 161.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 158.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 147.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 142.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 139.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 132.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

444.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 444.8
FF:10181-103D1 60 years, female 469.5
FF:10159-103A6 76 years, female 420.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 83.2
Samples: 4

Max nTPM: 91.8
Min nTPM: 71.4
Sample A Female 91.4
Sample B Female 78.3
Sample C Male 71.4
Sample D Male 91.8
Ventral spinal cord
nTPM: 106.9
Samples: 4

Max nTPM: 128.5
Min nTPM: 87.6
Sample A Female 113.0
Sample B Female 98.3
Sample C Male 128.5
Sample D Male 87.6

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