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EEF1A1
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  • TISSUE

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  • EEF1A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:3982.3 nTPM
HPA Brain:2942.3 nTPM
GTEx:3982.3 nTPM
FANTOM5:37.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2942.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2060.2
1981 Female, age 72, midline 2632.3
2565 Male, age 75, midline 2448.3
2048 Male, age 55, midline 1993.6
2816 Male, age 47, midline 1692.0
2194 Female, age 79, both hemispheres 1534.7
Cervical spinal cord, dorsal horn
nTPM: 2125.9
2173 Female, age 72, unknown 2938.5
2069 Male, age 47, both hemispheres 2653.4
2296 Male, age 66, both hemispheres 2549.6
1877 Male, age 55, unknown 1947.4
2297 Male, age 75, both hemispheres 1373.7
2721 Male, age 90, both hemispheres 1292.5
Cervical spinal cord, ventral horn
nTPM: 2942.3
2480 Male, age 75, both hemispheres 4228.3
2098 Female, age 72, unknown 3591.6
2809 Male, age 90, both hemispheres 3559.7
2295 Male, age 66, both hemispheres 2779.0
2068 Male, age 55, unknown 2221.7
2820 Female, age 79, both hemispheres 1273.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3982.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 3982.3
Samples: 204

Max nTPM: 7408.8
Min nTPM: 1658.5
Std nTPM: 944.8
Median nTPM: 3939.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7408.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 7033.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 6539.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 6474.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 6087.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 5929.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 5882.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 5873.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 5649.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 5607.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 5601.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 5579.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 5531.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 5519.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 5467.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 5450.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 5386.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 5317.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 5297.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 5291.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 5217.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 5213.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 5191.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 5171.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5167.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 5124.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 5087.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 5066.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 5052.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 5011.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 4956.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 4953.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 4940.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 4928.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 4833.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4786.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 4777.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 4737.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 4732.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 4666.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 4648.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 4646.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 4640.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 4638.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 4630.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4625.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 4609.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 4607.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 4593.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 4587.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 4535.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 4481.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 4455.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 4417.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 4408.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 4407.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 4404.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 4387.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 4376.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4376.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 4361.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 4337.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 4331.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 4330.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 4330.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 4304.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 4297.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 4278.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 4269.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 4269.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 4264.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 4255.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 4252.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 4239.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 4228.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 4212.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 4211.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 4180.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 4178.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 4172.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 4168.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 4149.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 4136.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 4133.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 4095.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 4076.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 4075.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 4075.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 4072.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 4058.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4051.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 4032.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 4023.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 4020.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 4011.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 4008.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 4002.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 3976.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3974.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 3971.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 3961.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 3944.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 3933.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 3914.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3908.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 3893.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 3887.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 3884.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 3868.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 3863.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 3858.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3837.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 3815.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 3803.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 3795.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 3790.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 3774.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 3755.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 3736.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 3697.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 3695.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 3692.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 3691.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 3668.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 3662.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3653.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 3648.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 3641.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 3619.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 3605.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3602.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 3599.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 3554.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 3552.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 3552.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 3544.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 3539.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 3532.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 3501.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3482.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3481.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 3452.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 3448.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 3436.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 3405.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3399.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 3395.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3384.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 3378.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 3347.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 3320.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 3282.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 3280.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 3272.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 3258.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 3253.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 3239.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 3234.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 3217.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 3214.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 3188.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 3176.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3160.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 3154.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 3133.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 3112.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3098.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 3035.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 3034.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 3031.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 3017.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 2980.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 2980.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2962.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 2916.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 2906.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 2900.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 2897.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 2894.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2888.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 2860.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2858.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2836.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 2814.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 2809.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 2788.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2783.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2769.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 2755.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2752.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 2740.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2717.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 2710.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2684.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2677.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 2673.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 2646.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2620.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2569.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2472.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 2470.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2459.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1683.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1658.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 37.4
FF:10181-103D1 60 years, female 37.5
FF:10159-103A6 76 years, female 37.3

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