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EEF1A1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • EEF1A1
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
NUCLEOTIDE METABOLISM
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

EEF1A1
Synonyms EE1A1, EEF1A, EF1A, EF1A1, EF1alpha1, LENG7
Gene descriptioni

Full gene name according to HGNC.

Eukaryotic translation elongation factor 1 alpha 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Essential proteins
Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Protein processing (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Enteric stem cells, Enteric transient amplifying cells, Epididymal basal cells, Epididymal efferent duct absorptive cells, Epididymal principal cells, Paneth cells)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Ribosome (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Cytosol
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband q13
Chromosome location (bp) 73489308 - 73525587
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

14
Ensembl ENSG00000156508 (version 109)
Entrez gene 1915
HGNC HGNC:3189
UniProt P68104
GeneCards EEF1A1
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Non-specific - Ribosome

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 13
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
EEF1A271025117
EEF1B2341226
EEF1G10949119
GADD45G9291302
LAMTOR5141718710
MAPK1424276640
MDM2476126100
MRPL4214225297
NXF118629730
TTLL12457111
VARS1432107
ZBTB167433800
ZDHHC17273249018
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 12 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
BBS19161000
GADD45G9291302
LAMTOR5141718710
MAPK1424276640
MDM2476126100
MRPL4214225297
PCNA34371501014
SPHK104200
TTLL12457111
YWHAZ2221643483248
ZBTB167433800
ZDHHC17273249018
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 118
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ABCC1001210
ABTB200500
ACE2101327800
ACTB772719511134
AGR236422702
ALPL00100
ATP5F1B101476115
CCNF4462401
CD813221960
CDK91714125190
CTIF00800
CUL3404577120
CUL4A71013800
DCTN12115110220
DDX1653865
EEF1A271025117
EEF1B2341226
EEF1D5123600
EEF1G10949119
EEF2235290
EFTUD254151814630
EIF3F1442471010
ENO311810
ESR2266000
FUS142815060
GADD45A6141601
GADD45G9291302
GAPDH92997121
GART001500
GORASP23411247420
GSK3B273018680
H2AX2230128039
HDAC6161916712
HNRNPA12212208280
HSF110257930
HSPA1A1731800
HSPA538322682586
HSPA8654545729101
HSPA991281412
HSPB13013910534
HSPE1021720
HTRA25554010
HYPK451703
ILF2148903224
KRAS115414160
LAMTOR5141718710
LIG4343310
MAD2L273214502
MAPK1424276640
MDM2476126100
MID19272600
MRPL4214225297
MRPS711030845
NIPSNAP2352603
NLGN300600
NOP56133129618
NXF118629730
PABPC1202514400
PFKP144000
PHGDH2129250
PICALM3224160
PLCG111274700
PPP2R1A51351231547
PRKN1111140500
RAD23A9423715
RAF13242196140
RBBP89123711
RBX1121413121
RPA171042011
RPA2111537620
RPA35631411
RPL10A236943958
RPL1174101341360
RPL1270741910
RPL1720183094
RPL18A136871148
RPL2411383333
RPL34331170185
RPL30233883361
RPL4929147124133
RPL5981213921615
RPL7A51611731137
RPL91828813112
RPLP058611138162
RPS113861011215
RPS132851013727
RPS14267863527
RPS250812050120
RPS2315485416
RPS3A375130052
RPS4X20131075811
RPS5204913914
RPS694427140105
RPS844411359137
RPSA3211954079
RUVBL2671114210333
SAMHD1442000
SNCA2412615400
SNW148891291925
SRRM215671139
STAT6031400
STAU13213371390
STK42317947247
SUGT15341100
TDRD3112510
TP5312316670450
TPT151519401
TTLL12457111
TUBB221889082
UBD341500
UBR5559624
VARS1432107
VCP5756348435
YAP13132304100
ZBTB167433800
ZBTB7A262500
ZDHHC17273249018
ZPR100200
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 4
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CAPZB10061336660
EEF1G10949119
NXF118629730
PHAX92162216
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 11
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CCR13530224
EEF1A271025117
EEF1B2341226
EEF1G10949119
MAGEA131214010
MLLT6368015
MRPL4214225297
PBDC100004
SLURP1010059
TTLL12457111
VARS1432107
Show allShow less
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene EEF1A1 is associated with 1 reactions in 1 different subsystems, and present in the compartments: Extracellular. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Nucleotide metabolism Cytosol, Lysosome, Mitochondria, Nucleus, Extracellular, Golgi apparatus 151 80 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
EEF1A1-201 P68104
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-202 P68104
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-203 P68104
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-204 P68104
Q5JR01
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-206 P68104
A6PW80
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-211 A0A087WVQ9
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
459 aa
49.9 kDa
No 0
EEF1A1-212 P68104
A0A087WV01
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-213 A0A7I2V3H3
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
376 aa
40.9 kDa
No 0
EEF1A1-214 P68104
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-216 P68104
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-219 P68104
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-220 A0A7I2V5N4
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
433 aa
47.3 kDa
No 0
EEF1A1-221 P68104
Q6IPS9
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
462 aa
50.1 kDa
No 0
EEF1A1-222 A0A7I2V659
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
459 aa
49.8 kDa
No 0
Show allShow less

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