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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
122.1
Sample id
Sample description
nTPM
Amygdala nTPM: 63.6
1987
Female, age 91, left hemisphere
254.5
2517
Female, age 94, left hemisphere
29.8
2514
Male, age 75, right hemisphere
22.2
2695
Female, age 67, right hemisphere
8.3
2814
Male, age 76, right hemisphere
3.3
Basal amygdala nTPM: 33.4
1955
Male, age 76, both hemispheres
45.9
2110
Male, age 80, left hemisphere
42.6
2685
Female, age 94, left hemisphere
37.3
2827
Female, age 67, right hemisphere
27.7
2609
Male, age 75, right hemisphere
24.4
2243
Female, age 91, right hemisphere
22.8
Central amygdala nTPM: 122.1
2701
Female, age 91, right hemisphere
451.4
2239
Male, age 80, left hemisphere
69.3
2515
Male, age 75, right hemisphere
58.2
2826
Female, age 94, left hemisphere
28.1
1905
Male, age 76, both hemispheres
3.6
Corticomedial amygdala nTPM: 70.6
2429
Female, age 94, left hemisphere
123.2
2829
Male, age 80, left hemisphere
94.6
2240
Male, age 76, both hemispheres
80.9
2535
Female, age 67, right hemisphere
73.4
2428
Male, age 75, right hemisphere
28.6
2242
Female, age 91, right hemisphere
23.3
Lateral amygdala nTPM: 54.8
2255
Female, age 91, right hemisphere
193.9
1883
Male, age 76, both hemispheres
32.0
2516
Male, age 75, right hemisphere
29.6
2256
Male, age 80, left hemisphere
26.5
2830
Female, age 67, right hemisphere
26.1
2534
Female, age 94, left hemisphere
20.5
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
156.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 156.2
Samples: 181
Max nTPM: 838.8
Min nTPM: 4.9
Std nTPM: 147.3
Median nTPM: 113.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
838.8
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
786.0
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
778.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
592.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
565.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
515.2
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
457.8
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
443.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
430.7
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
422.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
415.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
389.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
367.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
363.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
354.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
344.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
343.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
327.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
326.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
325.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
321.7
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
320.1
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
311.5
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
311.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
311.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
310.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
308.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
303.0
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
302.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
298.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
295.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
285.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
281.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
267.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
265.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
260.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
259.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
251.3
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
250.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
245.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
237.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
237.2
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
237.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
235.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
234.7
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
223.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
214.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
213.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
208.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
206.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
205.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
203.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
191.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
186.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
185.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
180.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
180.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
177.7
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
175.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
174.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
164.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
158.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
157.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
150.9
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
149.8
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
146.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
146.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
145.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
144.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
143.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
142.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
142.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
135.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
134.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
133.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
131.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
131.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
130.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
128.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
127.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
121.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
120.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
119.4
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
118.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
117.0
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
116.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
115.3
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
115.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
113.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
113.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
113.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
111.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
110.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
108.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
108.6
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
108.5
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
108.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
106.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
102.6
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
97.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
96.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
96.6
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
96.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
96.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
93.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
92.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
91.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
90.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
90.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
88.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
85.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
84.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
84.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
83.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
82.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
80.4
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
76.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
75.0
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
74.9
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
73.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
69.5
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
64.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
61.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
60.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
60.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
59.5
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
59.4
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
58.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
58.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
57.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
56.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
55.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
54.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
51.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
51.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
50.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
47.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
47.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
47.1
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
46.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
45.9
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
45.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
45.3
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
45.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
44.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
43.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
43.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
39.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
38.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
38.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
37.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
34.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
33.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
31.9
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
31.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
30.2
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
29.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
28.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
27.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
27.1
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
24.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
23.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
22.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
22.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
20.7
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
19.3
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
17.9
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
17.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
17.7
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
17.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
17.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
14.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
14.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
12.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
11.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
11.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
10.6
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
10.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
6.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
6.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
4.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
383.3
Pig sample
Sample description
nTPM
Amygdala nTPM: 383.3
Samples: 4
Max nTPM: 586.5
Min nTPM: 200.3
Sample A
Female
586.5
Sample B
Female
200.3
Sample C
Male
276.0
Sample D
Male
470.5
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
594.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 594.4
Samples: 4
Max nTPM: 667.4
Min nTPM: 521.7
Sample A
Male
616.8
Sample B
Male
571.5
Sample C
Female
667.4
Sample D
Female
521.7
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
