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  • SUMMARY

  • TISSUE

  • BRAIN

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BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expression
Hypothalamusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Neuronal projections: High
Synapses: High
Mouse brain, Intensity
Hypothalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

101.576
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:622.0 nTPM
HPA Brain:999.9 nTPM
GTEx:622.0 nTPM
Pig:268.6 nTPM
Mouse:207.8 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA019472
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses High

HYPOTHALAMUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody CAB034105
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses High

HYPOTHALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA019472
Hypothalamus mean intensity 101.576
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Dorsal tuberomammillary nucleus 49.703
Mammillary nucleus 2.389
Periventricular hypothalamic nucleus 67.713
Supraoptic nucleus 18.279
Tuberal nucleus 91.677
Ventral tuberomammillary nucleus -
Lateral preoptic area 39.993
Medial preoptic area 27.357
Suprachiasmatic nucleus 43.158
Paraventricular hypothalamic nucleus 35.862
Anterior hypothalamic area, central -
Ventral medial hypothalamic nucleus 73.479
Ventral medial hypothalamic nucleus* -
Arcuate nucleus 77.888
Arcuate nucleus* -
Peduncular part of lateral hypothalmus 38.946
Dorsal medial hypothalamic nucleus 41.375
Stria terminalis* -

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

999.9
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 999.9
2226 Male, age 75, left hemisphere 1327.3
1961 Female, age 42, unknown 672.6
Dorsomedial nucleus
nTPM: 96.9
2017 Female, age 42, unknown 172.9
2041 Female, age 72, unknown 111.6
1989 Male, age 62, unknown 6.3
Lateral hypothalamic area
nTPM: 194.8
2228 Male, age 66, unknown 293.2
1791 Male, age 80, right hemisphere 210.5
2271 Male, age 75, both hemispheres 151.1
2412 Male, age 62, unknown 124.3
Mammillary body
nTPM: 11.0
1948 Female, age 72, unknown 33.5
1945 Male, age 80, right hemisphere 14.2
2413 Male, age 66, unknown 3.7
1834 Female, age 42, unknown 2.7
1923 Female, age 72, unknown 0.9
Paraventricular nucleus
nTPM: 188.5
2700 Male, age 62, unknown 188.5
Preoptic area
nTPM: 182.2
1907 Male, age 80, right hemisphere 228.6
2414 Female, age 72, unknown 202.0
1861 Female, age 42, unknown 116.1
Supraoptic nucleus
nTPM: 297.8
1894 Female, age 72, unknown 530.1
2043 Male, age 62, unknown 194.2
2835 Female, age 72, unknown 169.1
Ventromedial nucleus
nTPM: 225.6
1822 Female, age 42, unknown 352.2
1982 Female, age 72, unknown 98.9

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

622.0
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 622.0
Samples: 257

Max nTPM: 6306.5
Min nTPM: 4.9
Std nTPM: 787.2
Median nTPM: 356.2
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 6306.5
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 4349.5
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 4167.5
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 3539.5
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 3498.4
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 3125.1
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 2600.1
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 2497.0
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 2264.1
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 2248.0
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 2220.1
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 2211.0
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 2210.6
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 2195.2
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 2176.6
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 2079.7
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 1942.8
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 1871.2
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 1870.1
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 1862.6
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 1839.0
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 1823.6
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 1738.6
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 1704.5
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 1698.0
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 1663.6
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 1628.3
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 1557.0
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 1484.1
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 1480.9
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 1319.2
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 1307.8
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 1141.9
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 1129.2
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 1082.9
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 1063.4
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 1055.9
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 1043.3
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 1006.3
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 997.5
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 985.7
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 983.9
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 965.8
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 965.7
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 965.4
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 960.9
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 945.2
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 937.1
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 931.7
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 918.8
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 899.6
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 850.5
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 847.3
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 845.3
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 811.9
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 801.8
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 788.7
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 781.8
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 770.4
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 750.7
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 743.4
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 741.5
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 724.0
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 722.8
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 713.4
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 710.7
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 710.6
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 709.2
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 709.0
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 705.3
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 704.7
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 698.1
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 694.0
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 690.3
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 665.0
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 664.8
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 643.4
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 639.4
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 633.4
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 625.4
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 624.8
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 619.2
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 607.5
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 600.4
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 577.0
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 576.7
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 576.4
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 572.1
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 571.5
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 545.6
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 537.9
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 536.5
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 525.2
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 517.0
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 509.2
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 506.4
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 505.2
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 499.0
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 496.4
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 489.1
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 476.2
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 473.7
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 452.6
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 447.8
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 443.4
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 441.7
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 440.6
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 433.9
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 433.6
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 429.5
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 425.5
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 424.7
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 418.3
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 414.6
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 405.3
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 402.9
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 398.3
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 397.4
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 395.1
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 389.3
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 389.2
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 388.4
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 387.3
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 380.0
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 375.5
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 373.4
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 368.5
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 357.0
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 356.2
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 353.0
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 347.2
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 347.2
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 342.9
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 342.0
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 341.1
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 338.0
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 335.9
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 332.4
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 329.5
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 328.2
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 322.6
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 319.9
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 319.7
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 317.8
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 316.4
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 316.0
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 306.9
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 303.3
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 302.0
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 302.0
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 301.8
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 299.5
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 299.4
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 295.9
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 291.6
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 288.6
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 286.9
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 284.8
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 284.3
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 281.9
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 280.6
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 280.0
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 279.3
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 274.3
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 268.7
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 263.2
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 262.3
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 261.0
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 260.0
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 259.1
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 255.9
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 254.7
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 252.9
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 248.4
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 246.1
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 236.4
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 231.2
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 228.2
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 227.6
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 223.1
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 211.7
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 207.3
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 205.0
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 200.0
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 195.5
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 193.0
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 191.0
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 186.9
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 182.9
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 182.3
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 182.0
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 181.0
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 178.3
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 177.7
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 176.4
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 163.5
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 148.8
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 146.9
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 146.1
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 145.0
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 143.0
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 142.6
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 134.3
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 119.8
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 116.2
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 112.7
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 109.8
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 109.7
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 107.3
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 104.1
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 103.0
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 102.5
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 101.5
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 94.8
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 93.1
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 91.7
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 91.3
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 88.9
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 88.1
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 87.8
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 86.0
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 84.5
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 82.9
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 80.3
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 78.5
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 76.0
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 75.0
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 72.2
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 71.5
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 68.2
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 64.7
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 58.8
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 57.5
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 57.4
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 55.1
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 54.3
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 53.9
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 52.0
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 49.1
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 48.1
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 46.2
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 46.1
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 40.2
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 39.5
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 34.1
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 33.6
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 30.4
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 29.7
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 27.6
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 27.4
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 24.7
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 15.1
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 14.2
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 12.7
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 12.7
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 5.2
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 4.9
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.6
Pig sample Sample description nTPM
Hypothalamus
nTPM: 268.7
Samples: 4

Max nTPM: 524.6
Min nTPM: 84.1
Sample A Female 304.6
Sample B Female 84.1
Sample C Male 524.6
Sample D Male 161.3

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.8
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 207.8
Samples: 4

Max nTPM: 248.1
Min nTPM: 167.1
Sample A Male 248.1
Sample B Male 236.2
Sample C Female 179.8
Sample D Female 167.1

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.9
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 3.9
1002 Antisense, RP_Baylor_103041, Mouse strain C57BL/6J (56 days, male) 3.9
1001 Antisense, RP_Baylor_103041, Mouse strain C57BL/6J (56 days, male) 3.5

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