A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
3.9
nTPM
Schmiedel:
21.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
Classical monocyte nTPM: 0.0
Samples: 6
Max nTPM: 0.0
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.0
P10809_1039
0.0
P10809_1058
0.0
P10809_1080
0.0
P10809_1107
0.0
Intermediate monocyte nTPM: 0.1
Samples: 6
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1004
0.3
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.0
P10809_1108
0.3
Non-classical monocyte nTPM: 0.5
Samples: 5
Max nTPM: 1.3
Min nTPM: 0.0
P10809_1005
0.9
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
1.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
Monaco sample
nTPM
Classical monocyte nTPM: 0.1
Samples: 4
Max nTPM: 0.4
Min nTPM: 0.0
RHH5313_R3680
0.4
RHH5221_R3593
0.0
RHH5250_R3622
0.0
RHH5279_R3651
0.0
Intermediate monocyte nTPM: 1.5
Samples: 4
Max nTPM: 2.1
Min nTPM: 0.9
RHH5314_R3681
0.9
RHH5222_R3594
1.9
RHH5251_R3623
0.9
RHH5280_R3652
2.1
Non-classical monocyte nTPM: 3.9
Samples: 4
Max nTPM: 5.0
Min nTPM: 2.6
RHH5315_R3682
2.6
RHH5223_R3595
3.4
RHH5252_R3624
4.7
RHH5281_R3653
5.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.6
Schmiedel sample id
TPM
Classical monocyte TPM: 0.5
Samples: 91
Max TPM: 1.1
Min TPM: 0.1
MONOCYTES_1
1.1
MONOCYTES_2
0.9
MONOCYTES_3
0.9
MONOCYTES_4
0.9
MONOCYTES_5
0.9
MONOCYTES_6
0.8
MONOCYTES_7
0.8
MONOCYTES_8
0.8
MONOCYTES_9
0.8
MONOCYTES_10
0.7
MONOCYTES_11
0.7
MONOCYTES_12
0.7
MONOCYTES_13
0.7
MONOCYTES_14
0.7
MONOCYTES_15
0.7
MONOCYTES_16
0.7
MONOCYTES_17
0.7
MONOCYTES_18
0.6
MONOCYTES_19
0.6
MONOCYTES_20
0.6
MONOCYTES_21
0.6
MONOCYTES_22
0.6
MONOCYTES_23
0.6
MONOCYTES_24
0.6
MONOCYTES_25
0.6
MONOCYTES_26
0.6
MONOCYTES_27
0.6
MONOCYTES_28
0.6
MONOCYTES_29
0.6
MONOCYTES_30
0.5
MONOCYTES_31
0.5
MONOCYTES_32
0.5
MONOCYTES_33
0.5
MONOCYTES_34
0.5
MONOCYTES_35
0.5
MONOCYTES_36
0.5
MONOCYTES_37
0.5
MONOCYTES_38
0.5
MONOCYTES_39
0.5
MONOCYTES_40
0.5
MONOCYTES_41
0.5
MONOCYTES_42
0.5
MONOCYTES_43
0.5
MONOCYTES_44
0.5
MONOCYTES_45
0.5
MONOCYTES_46
0.5
MONOCYTES_47
0.5
MONOCYTES_48
0.4
MONOCYTES_49
0.4
MONOCYTES_50
0.4
MONOCYTES_51
0.4
MONOCYTES_52
0.4
MONOCYTES_53
0.4
MONOCYTES_54
0.4
MONOCYTES_55
0.4
MONOCYTES_56
0.4
MONOCYTES_57
0.4
MONOCYTES_58
0.4
MONOCYTES_59
0.4
MONOCYTES_60
0.4
MONOCYTES_61
0.4
MONOCYTES_62
0.4
MONOCYTES_63
0.4
MONOCYTES_64
0.4
MONOCYTES_65
0.4
MONOCYTES_66
0.4
MONOCYTES_67
0.3
MONOCYTES_68
0.3
MONOCYTES_69
0.3
MONOCYTES_70
0.3
MONOCYTES_71
0.3
MONOCYTES_72
0.3
MONOCYTES_73
0.3
MONOCYTES_74
0.3
MONOCYTES_75
0.3
MONOCYTES_76
0.3
MONOCYTES_77
0.3
MONOCYTES_78
0.3
MONOCYTES_79
0.3
MONOCYTES_80
0.3
MONOCYTES_81
0.3
MONOCYTES_82
0.2
MONOCYTES_83
0.2
MONOCYTES_84
0.2
MONOCYTES_85
0.2
MONOCYTES_86
0.2
MONOCYTES_87
0.2
MONOCYTES_88
0.2
MONOCYTES_89
0.2
MONOCYTES_90
0.2
MONOCYTES_91
0.1
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Non-classical monocyte TPM: 21.6
Samples: 90
Max TPM: 47.0
Min TPM: 7.0
M2_1
47.0
M2_2
42.7
M2_3
40.9
M2_4
39.8
M2_5
39.2
M2_6
38.8
M2_7
38.1
M2_8
37.8
M2_9
37.0
M2_10
36.8
M2_11
36.7
M2_12
36.1
M2_13
34.6
M2_14
33.5
M2_15
33.2
M2_16
32.2
M2_17
32.0
M2_18
30.2
M2_19
30.0
M2_20
29.7
M2_21
29.3
M2_22
29.2
M2_23
28.6
M2_24
27.7
M2_25
27.4
M2_26
25.7
M2_27
25.6
M2_28
24.6
M2_29
24.4
M2_30
24.1
M2_31
23.9
M2_32
23.6
M2_33
23.4
M2_34
23.2
M2_35
22.7
M2_36
22.5
M2_37
21.8
M2_38
21.7
M2_39
21.6
M2_40
21.4
M2_41
21.1
M2_42
21.1
M2_43
20.9
M2_44
20.0
M2_45
19.9
M2_46
19.9
M2_47
19.6
M2_48
19.4
M2_49
19.3
M2_50
19.2
M2_51
18.2
M2_52
18.2
M2_53
18.0
M2_54
17.6
M2_55
17.5
M2_56
17.2
M2_57
16.9
M2_58
16.7
M2_59
16.5
M2_60
16.4
M2_61
16.4
M2_62
15.6
M2_63
15.6
M2_64
15.5
M2_65
14.7
M2_66
14.5
M2_67
14.2
M2_68
13.7
M2_69
13.7
M2_70
13.3
M2_71
13.2
M2_72
13.1
M2_73
12.5
M2_74
12.4
M2_75
11.4
M2_76
11.2
M2_77
11.1
M2_78
11.0
M2_79
10.6
M2_80
10.2
M2_81
10.2
M2_82
10.0
M2_83
9.9
M2_84
9.8
M2_85
9.6
M2_86
8.8
M2_87
8.7
M2_88
8.3
M2_89
8.2
M2_90
7.0
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