BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:743.4 nTPM
HPA Brain:875.9 nTPM
GTEx:743.4 nTPM
FANTOM5:1185.4 Scaled Tags Per Million
Macaque:337.5 nTPM
Mouse:392.5 nTPM
Rat:253.7 nTPM
Pig:478.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 875.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 729.7
2586 Male, age 75, left hemisphere 928.6
2828 Female, age 72, unknown 888.7
1833 Male, age 53, unknown 780.7
1870 Female, age 42, unknown 775.2
1830 Male, age 51, unknown 745.5
2411 Female, age 72, unknown 724.6
2666 Male, age 74, left hemisphere 713.7
2019 Male, age 18, unknown 675.1
1827 Male, age 72, unknown 639.6
2219 Male, age 76, both hemispheres 425.1
Dorsal raphe nucleus
nTPM: 590.2
2016 Female, age 72, unknown 731.8
1828 Male, age 53, unknown 650.9
2750 Male, age 76, both hemispheres 577.2
2047 Male, age 72, unknown 512.7
2298 Female, age 72, unknown 478.7
Inferior colliculus
nTPM: 682.0
2849 Male, age 72, unknown 782.3
1848 Female, age 42, unknown 731.4
1890 Male, age 53, unknown 619.9
2097 Female, age 72, unknown 594.2
Median raphe nucleus
nTPM: 367.7
2220 Male, age 76, midline 367.7
Periaquaductal grey, anterior
nTPM: 608.7
2502 Female, age 75, unknown 780.3
1947 Male, age 18, unknown 569.7
1795 Male, age 51, unknown 476.2
Periaquaductal grey, dorsal
nTPM: 629.2
2464 Female, age 72, unknown 731.7
1840 Male, age 53, unknown 653.2
2850 Male, age 76, both hemispheres 610.4
1831 Male, age 72, unknown 521.6
Periaquaductal grey, lateral
nTPM: 581.2
2053 Male, age 18, unknown 694.4
2140 Male, age 76, both hemispheres 649.1
2272 Male, age 74, both hemispheres 400.2
Pretectal area
nTPM: 589.4
2316 Male, age 76, right hemisphere 734.8
1815 Male, age 53, unknown 696.5
2667 Female, age 75, unknown 671.7
1817 Female, age 42, unknown 641.4
2407 Male, age 75, both hemispheres 629.1
2825 Male, age 18, unknown 626.3
1944 Female, age 72, unknown 551.4
2007 Male, age 72, unknown 520.5
2273 Male, age 74, both hemispheres 486.2
1816 Male, age 51, unknown 485.0
2224 Female, age 72, unknown 441.0
Red nucleus
nTPM: 875.9
1821 Female, age 72, unknown 1048.8
1865 Male, age 51, unknown 1009.2
2769 Male, age 72, unknown 983.5
1904 Male, age 53, unknown 970.0
1954 Female, age 42, unknown 939.8
2503 Female, age 72, unknown 927.1
2227 Male, age 72, unknown 924.9
2823 Male, age 76, right hemisphere 858.1
2588 Male, age 74, left hemisphere 856.1
2785 Male, age 18, unknown 752.2
2725 Female, age 75, unknown 652.0
2584 Male, age 75, left hemisphere 589.4
Substantia nigra
nTPM: 619.1
2699 Male, age 18, unknown 813.4
1851 Male, age 51, unknown 732.4
2409 Female, age 72, unknown 681.3
1889 Female, age 72, unknown 627.4
2583 Male, age 75, right hemisphere 622.8
1916 Female, age 42, unknown 593.2
2590 Female, age 75, unknown 571.5
2241 Male, age 72, unknown 554.2
2665 Male, age 74, both hemispheres 514.8
1941 Male, age 53, unknown 479.6
Superior colliculus
nTPM: 723.9
1995 Male, age 72, unknown 949.2
2664 Male, age 75, both hemispheres 927.5
1913 Female, age 42, unknown 850.4
1839 Male, age 51, unknown 759.0
1895 Male, age 76, right hemisphere 720.2
2587 Male, age 74, left hemisphere 693.7
2668 Female, age 75, unknown 666.5
1796 Male, age 53, unknown 613.4
2087 Female, age 72, unknown 544.8
2261 Male, age 18, unknown 514.6
Ventral tegmental area
nTPM: 575.4
2410 Female, age 72, unknown 813.4
1915 Female, age 42, unknown 607.2
1942 Male, age 51, unknown 544.8
2021 Male, age 53, unknown 532.9
2223 Female, age 72, unknown 510.4
2218 Male, age 76, both hemispheres 443.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 743.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 743.4
Samples: 183

Max nTPM: 1685.0
Min nTPM: 208.0
Std nTPM: 241.3
Median nTPM: 712.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1685.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1357.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1338.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1269.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1256.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1249.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1245.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1222.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1209.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1205.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1168.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1185.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1185.4
FF:10158-103A5 76 years, female 1185.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 337.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 337.5
Samples: 1

Max nTPM: 337.5
Min nTPM: 337.5
Sample A 337.5
Midbrain
nTPM: 273.6
Samples: 1

Max nTPM: 273.6
Min nTPM: 273.6
Sample A 273.6
Superior colliculi
nTPM: 299.5
Samples: 1

Max nTPM: 299.5
Min nTPM: 299.5
Sample A 299.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 478.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 478.1
Samples: 3

Max nTPM: 539.0
Min nTPM: 410.6
Sample A Female 484.6
Sample B Female 539.0
Sample C Male 410.6
Midbrain
nTPM: 408.3
Samples: 3

Max nTPM: 635.0
Min nTPM: 279.6
Sample B Female 635.0
Sample C Male 310.4
Sample D Male 279.6
Periaqueductal gray
nTPM: 418.6
Samples: 3

Max nTPM: 524.1
Min nTPM: 356.8
Sample B Female 524.1
Sample C Male 374.9
Sample D Male 356.8
Superior colliculi
nTPM: 437.7
Samples: 4

Max nTPM: 496.6
Min nTPM: 352.9
Sample A Female 496.6
Sample B Female 352.9
Sample C Male 424.4
Sample D Male 476.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 392.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 392.5
Samples: 4

Max nTPM: 421.3
Min nTPM: 372.1
Sample A 421.3
Sample B 403.7
Sample C 373.0
Sample D 372.1

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 253.7
Rat sample Sample description nTPM
Midbrain
nTPM: 253.7
Samples: 4

Max nTPM: 263.9
Min nTPM: 236.7
Sample A 253.5
Sample A 260.7
Sample A 263.9
Sample A 236.7

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