MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:175.9 nTPM
HPA Brain:87.3 nTPM
GTEx:175.9 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:110.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 87.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.6
2019 Male, age 18, unknown 105.0
1827 Male, age 72, unknown 85.4
2411 Female, age 72, unknown 84.9
2586 Male, age 75, left hemisphere 79.6
1870 Female, age 42, unknown 77.4
2219 Male, age 76, both hemispheres 70.7
2828 Female, age 72, unknown 70.0
1833 Male, age 53, unknown 69.2
1830 Male, age 51, unknown 66.8
2666 Male, age 74, left hemisphere 56.8
Dorsal raphe nucleus
nTPM: 77.3
2298 Female, age 72, unknown 97.0
2047 Male, age 72, unknown 82.2
1828 Male, age 53, unknown 80.4
2750 Male, age 76, both hemispheres 68.9
2016 Female, age 72, unknown 58.0
Inferior colliculus
nTPM: 81.0
2097 Female, age 72, unknown 92.6
1890 Male, age 53, unknown 87.0
1848 Female, age 42, unknown 76.6
2849 Male, age 72, unknown 67.9
Median raphe nucleus
nTPM: 69.3
2220 Male, age 76, midline 69.3
Periaquaductal grey, anterior
nTPM: 71.8
1947 Male, age 18, unknown 78.1
2502 Female, age 75, unknown 73.9
1795 Male, age 51, unknown 63.4
Periaquaductal grey, dorsal
nTPM: 63.9
1831 Male, age 72, unknown 66.4
1840 Male, age 53, unknown 66.0
2850 Male, age 76, both hemispheres 64.8
2464 Female, age 72, unknown 58.2
Periaquaductal grey, lateral
nTPM: 63.8
2272 Male, age 74, both hemispheres 73.1
2053 Male, age 18, unknown 62.0
2140 Male, age 76, both hemispheres 56.4
Pretectal area
nTPM: 87.3
2007 Male, age 72, unknown 121.2
1817 Female, age 42, unknown 104.6
1944 Female, age 72, unknown 103.0
1816 Male, age 51, unknown 98.1
2667 Female, age 75, unknown 86.1
2273 Male, age 74, both hemispheres 84.5
1815 Male, age 53, unknown 84.2
2224 Female, age 72, unknown 76.7
2407 Male, age 75, both hemispheres 71.4
2825 Male, age 18, unknown 66.9
2316 Male, age 76, right hemisphere 63.6
Red nucleus
nTPM: 78.3
1821 Female, age 72, unknown 102.8
2725 Female, age 75, unknown 88.7
2785 Male, age 18, unknown 88.0
1904 Male, age 53, unknown 81.1
1865 Male, age 51, unknown 79.7
2823 Male, age 76, right hemisphere 75.9
2769 Male, age 72, unknown 74.3
1954 Female, age 42, unknown 73.4
2503 Female, age 72, unknown 72.4
2227 Male, age 72, unknown 71.0
2584 Male, age 75, left hemisphere 69.8
2588 Male, age 74, left hemisphere 62.1
Substantia nigra
nTPM: 84.9
1889 Female, age 72, unknown 115.1
1916 Female, age 42, unknown 108.3
1941 Male, age 53, unknown 92.9
1851 Male, age 51, unknown 91.4
2409 Female, age 72, unknown 83.4
2665 Male, age 74, both hemispheres 79.7
2590 Female, age 75, unknown 77.7
2241 Male, age 72, unknown 69.8
2583 Male, age 75, right hemisphere 65.8
2699 Male, age 18, unknown 64.5
Superior colliculus
nTPM: 70.6
1895 Male, age 76, right hemisphere 90.6
2587 Male, age 74, left hemisphere 83.8
2087 Female, age 72, unknown 73.8
1796 Male, age 53, unknown 72.0
1839 Male, age 51, unknown 69.3
2261 Male, age 18, unknown 69.0
1913 Female, age 42, unknown 64.1
2668 Female, age 75, unknown 63.4
1995 Male, age 72, unknown 62.9
2664 Male, age 75, both hemispheres 57.0
Ventral tegmental area
nTPM: 74.3
1915 Female, age 42, unknown 87.1
2410 Female, age 72, unknown 86.9
2218 Male, age 76, both hemispheres 74.4
1942 Male, age 51, unknown 73.5
2223 Female, age 72, unknown 66.0
2021 Male, age 53, unknown 57.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 175.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 175.9
Samples: 183

Max nTPM: 357.8
Min nTPM: 76.6
Std nTPM: 48.0
Median nTPM: 169.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 357.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 297.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 294.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 293.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 285.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 283.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 281.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 275.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 273.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 273.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 270.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.7
FF:10158-103A5 76 years, female 14.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 110.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.3
Samples: 4

Max nTPM: 115.8
Min nTPM: 57.6
Sample A Female 115.8
Sample B Female 57.6
Sample C Male 81.5
Sample D Male 62.4
Midbrain
nTPM: 96.0
Samples: 4

Max nTPM: 110.4
Min nTPM: 76.5
Sample A Female 106.1
Sample B Female 76.5
Sample C Male 110.4
Sample D Male 91.1
Periaqueductal gray
nTPM: 67.7
Samples: 3

Max nTPM: 75.2
Min nTPM: 59.9
Sample B Female 67.9
Sample C Male 75.2
Sample D Male 59.9
Superior colliculi
nTPM: 110.9
Samples: 4

Max nTPM: 141.6
Min nTPM: 78.5
Sample A Female 133.1
Sample B Female 78.5
Sample C Male 141.6
Sample D Male 90.4

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