BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:216.8 nTPM
HPA Brain:364.6 nTPM
GTEx:216.8 nTPM
FANTOM5:92.7 Scaled Tags Per Million
Macaque:84.7 nTPM
Mouse:127.5 nTPM
Rat:96.0 nTPM
Pig:138.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 364.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.1
1870 Female, age 42, unknown 172.0
2828 Female, age 72, unknown 154.8
2411 Female, age 72, unknown 139.3
1833 Male, age 53, unknown 124.0
1827 Male, age 72, unknown 115.7
1830 Male, age 51, unknown 115.2
2019 Male, age 18, unknown 108.8
2219 Male, age 76, both hemispheres 86.0
2666 Male, age 74, left hemisphere 76.5
2586 Male, age 75, left hemisphere 69.1
Dorsal raphe nucleus
nTPM: 215.0
2298 Female, age 72, unknown 349.3
2016 Female, age 72, unknown 238.6
2750 Male, age 76, both hemispheres 185.5
1828 Male, age 53, unknown 162.8
2047 Male, age 72, unknown 138.9
Inferior colliculus
nTPM: 80.2
1848 Female, age 42, unknown 86.5
2849 Male, age 72, unknown 85.4
2097 Female, age 72, unknown 82.3
1890 Male, age 53, unknown 66.7
Median raphe nucleus
nTPM: 196.6
2220 Male, age 76, midline 196.6
Periaquaductal grey, anterior
nTPM: 146.4
1795 Male, age 51, unknown 198.6
2502 Female, age 75, unknown 148.0
1947 Male, age 18, unknown 92.7
Periaquaductal grey, dorsal
nTPM: 228.3
2850 Male, age 76, both hemispheres 433.7
1831 Male, age 72, unknown 182.0
1840 Male, age 53, unknown 172.2
2464 Female, age 72, unknown 125.3
Periaquaductal grey, lateral
nTPM: 364.6
2272 Male, age 74, both hemispheres 583.0
2140 Male, age 76, both hemispheres 329.1
2053 Male, age 18, unknown 181.8
Pretectal area
nTPM: 175.6
2273 Male, age 74, both hemispheres 541.5
2224 Female, age 72, unknown 207.2
2667 Female, age 75, unknown 206.4
2825 Male, age 18, unknown 169.3
1815 Male, age 53, unknown 138.1
1944 Female, age 72, unknown 131.4
2316 Male, age 76, right hemisphere 131.4
2407 Male, age 75, both hemispheres 115.8
1816 Male, age 51, unknown 113.7
1817 Female, age 42, unknown 91.9
2007 Male, age 72, unknown 85.2
Red nucleus
nTPM: 112.3
2785 Male, age 18, unknown 141.6
1865 Male, age 51, unknown 136.8
1904 Male, age 53, unknown 134.1
2227 Male, age 72, unknown 125.8
2769 Male, age 72, unknown 125.8
1954 Female, age 42, unknown 123.1
2503 Female, age 72, unknown 114.8
2823 Male, age 76, right hemisphere 109.7
2725 Female, age 75, unknown 101.2
2588 Male, age 74, left hemisphere 93.7
1821 Female, age 72, unknown 77.3
2584 Male, age 75, left hemisphere 63.8
Substantia nigra
nTPM: 93.3
2699 Male, age 18, unknown 142.5
1851 Male, age 51, unknown 111.0
1941 Male, age 53, unknown 97.8
2241 Male, age 72, unknown 96.8
2409 Female, age 72, unknown 95.2
2583 Male, age 75, right hemisphere 90.2
2590 Female, age 75, unknown 85.9
1889 Female, age 72, unknown 79.6
1916 Female, age 42, unknown 76.1
2665 Male, age 74, both hemispheres 58.0
Superior colliculus
nTPM: 159.2
1995 Male, age 72, unknown 278.2
1913 Female, age 42, unknown 244.9
2587 Male, age 74, left hemisphere 188.6
2261 Male, age 18, unknown 183.1
1796 Male, age 53, unknown 140.9
2087 Female, age 72, unknown 139.4
2668 Female, age 75, unknown 118.1
2664 Male, age 75, both hemispheres 117.5
1839 Male, age 51, unknown 100.2
1895 Male, age 76, right hemisphere 81.0
Ventral tegmental area
nTPM: 127.4
2021 Male, age 53, unknown 175.8
1915 Female, age 42, unknown 131.2
2223 Female, age 72, unknown 127.0
1942 Male, age 51, unknown 111.2
2410 Female, age 72, unknown 110.7
2218 Male, age 76, both hemispheres 108.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 216.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 216.8
Samples: 183

Max nTPM: 1189.9
Min nTPM: 36.9
Std nTPM: 155.4
Median nTPM: 175.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1189.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 818.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 795.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 732.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 718.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 676.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 661.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 557.7
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 547.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 512.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 442.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 92.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.7
FF:10158-103A5 76 years, female 92.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 84.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 79.9
Samples: 1

Max nTPM: 79.9
Min nTPM: 79.9
Sample A 79.9
Midbrain
nTPM: 84.7
Samples: 1

Max nTPM: 84.7
Min nTPM: 84.7
Sample A 84.7
Superior colliculi
nTPM: 32.5
Samples: 1

Max nTPM: 32.5
Min nTPM: 32.5
Sample A 32.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 138.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 138.3
Samples: 3

Max nTPM: 210.2
Min nTPM: 86.7
Sample A Female 210.2
Sample B Female 86.7
Sample C Male 117.9
Midbrain
nTPM: 80.8
Samples: 3

Max nTPM: 101.4
Min nTPM: 54.3
Sample B Female 101.4
Sample C Male 86.8
Sample D Male 54.3
Periaqueductal gray
nTPM: 138.8
Samples: 3

Max nTPM: 166.7
Min nTPM: 105.2
Sample B Female 105.2
Sample C Male 166.7
Sample D Male 144.4
Superior colliculi
nTPM: 99.3
Samples: 4

Max nTPM: 117.4
Min nTPM: 90.1
Sample A Female 117.4
Sample B Female 90.1
Sample C Male 90.1
Sample D Male 99.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 127.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 127.5
Samples: 4

Max nTPM: 130.1
Min nTPM: 123.4
Sample A 126.8
Sample B 130.1
Sample C 123.4
Sample D 129.6

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 96.0
Rat sample Sample description nTPM
Midbrain
nTPM: 96.0
Samples: 4

Max nTPM: 115.7
Min nTPM: 80.8
Sample A 80.8
Sample A 115.7
Sample A 95.4
Sample A 92.1

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