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S100B
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  • S100B
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

98.862
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:944.5 nTPM
HPA Brain:393.3 nTPM
GTEx:944.5 nTPM
FANTOM5:495.8 Scaled Tags Per Million
Pig:1408.8 nTPM
Mouse:158.7 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA015768Antibody CAB000073Antibody CAB078196
Glial cells HighHighHigh
Neuronal cells MediumLowHigh







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody CAB000073
Hippocampal formation mean intensity 98.862
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Polymorph layer of the dentate gyrus 28.598
Molecular layer of the dentate gyrus 52.224
Granular dentate gyrus 5.280
CA1 - oriens layer 58.172
CA1 - pyramidal layer 22.006
CA1 - radiatum layer 37.693
CA2 - oriens layer 93.059
CA2 - pyramidal layer 54.439
CA2 - radiatum layer 65.835
CA3 - oriens layer 62.433
CA3 - pyramidal layer 40.857
CA3 - radiatum layer 53.670
Stratum lucidum 53.473
Lacunosum moleculare 9.679
Subiculum 39.809

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

393.3
Sample id Sample description nTPM
Hippocampus
nTPM: 393.3
1911 Female, age 85, right hemisphere 447.7
2529 Female, age 94, left hemisphere 430.1
1898 Male, age 80, left hemisphere 429.5
1855 Male, age 76, left hemisphere 383.2
2148 Female, age 91, left hemisphere 368.0
2621 Female, age 67, right hemisphere 301.2
Dentate gyrus
nTPM: 334.7
2530 Female, age 94, left hemisphere 481.8
2010 Male, age 76, both hemispheres 398.4
2528 Male, age 74, both hemispheres 385.5
2246 Female, age 85, both hemispheres 309.8
1927 Female, age 91, both hemispheres 227.1
2531 Female, age 67, both hemispheres 205.9
Entorhinal gyrus
nTPM: 245.0
2117 Female, age 91, right hemisphere 418.7
1938 Female, age 85, left hemisphere 255.6
2686 Male, age 75, right hemisphere 251.0
2764 Male, age 80, right hemisphere 218.6
1787 Male, age 76, left hemisphere 192.7
2613 Female, age 94, left hemisphere 133.1
Hippocampus, CA1
nTPM: 279.6
1873 Female, age 85, both hemispheres 393.3
2527 Male, age 74, both hemispheres 307.2
2082 Female, age 91, right hemisphere 271.8
2045 Male, age 76, both hemispheres 241.9
2749 Male, age 80, left hemisphere 183.6
Hippocampus, CA2
nTPM: 301.7
2249 Male, age 74, both hemispheres 404.3
2113 Female, age 91, right hemisphere 331.8
2437 Female, age 94, left hemisphere 316.6
1963 Male, age 80, left hemisphere 303.1
1940 Female, age 85, left hemisphere 253.8
1892 Male, age 76, both hemispheres 200.6
Hippocampus, CA3
nTPM: 259.1
1891 Female, age 85, both hemispheres 393.9
2436 Male, age 74, both hemispheres 284.1
1867 Male, age 76, both hemispheres 283.6
2620 Female, age 94, left hemisphere 222.9
2137 Male, age 80, left hemisphere 202.6
2861 Female, age 67, both hemispheres 167.8
Parahippocampal cortex
nTPM: 227.8
2245 Female, age 91, both hemispheres 293.4
2692 Male, age 74, both hemispheres 282.4
2018 Male, age 76, both hemispheres 280.2
2532 Female, age 72, left hemisphere 258.1
1933 Female, age 85, both hemispheres 251.0
1990 Female, age 91, right hemisphere 221.2
1850 Male, age 80, both hemispheres 208.0
2250 Female, age 67, right hemisphere 168.9
2622 Female, age 67, right hemisphere 161.1
2693 Female, age 94, both hemispheres 154.0
Perirhinal gyrus
nTPM: 178.1
1794 Male, age 80, right hemisphere 188.2
1847 Female, age 91, left hemisphere 188.0
2521 Female, age 94, right hemisphere 183.3
1841 Female, age 85, right hemisphere 182.7
2848 Male, age 76, right hemisphere 148.2
Subiculum
nTPM: 373.7
2042 Male, age 76, both hemispheres 536.2
2729 Female, age 91, right hemisphere 418.6
1901 Male, age 80, both hemispheres 362.0
2438 Female, age 94, left hemisphere 358.9
2619 Male, age 74, both hemispheres 293.3
1977 Female, age 85, both hemispheres 273.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

944.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 944.5
Samples: 255

Max nTPM: 2711.3
Min nTPM: 156.6
Std nTPM: 376.1
Median nTPM: 916.3
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 2711.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2363.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2321.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 2172.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2086.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1998.3
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 1883.2
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 1798.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 1697.0
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 1649.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 1572.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1560.4
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 1545.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 1542.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 1541.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1498.0
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 1493.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1485.4
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 1471.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1433.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1432.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1419.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1411.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1391.5
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 1385.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1382.6
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 1358.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 1350.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 1341.2
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 1338.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1333.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 1329.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1319.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 1319.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1316.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1314.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1313.2
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 1309.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 1305.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1299.2
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 1293.6
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 1286.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 1274.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1260.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1252.0
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 1246.8
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 1237.7
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 1236.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1232.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1225.1
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 1210.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 1202.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 1199.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 1198.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 1192.3
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 1187.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 1187.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 1181.1
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 1179.1
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 1177.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 1147.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 1147.3
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 1147.0
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 1146.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 1143.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1135.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1133.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1132.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1117.5
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 1111.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 1111.6
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 1110.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 1098.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1098.0
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 1096.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1095.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1092.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1090.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 1085.5
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 1082.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 1081.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1073.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1066.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 1061.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 1061.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 1059.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1055.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 1054.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 1041.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 1038.7
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 1037.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1032.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 1018.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 1017.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 1015.4
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 1004.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 992.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 989.8
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 978.4
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 975.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 974.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 972.8
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 972.7
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 970.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 969.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 963.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 961.9
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 960.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 955.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 953.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 952.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 948.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 947.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 947.0
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 946.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 945.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 943.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 939.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 937.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 936.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 933.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 932.9
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 932.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 931.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 929.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 929.2
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 924.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 916.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 911.4
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 908.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 907.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 903.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 898.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 898.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 891.1
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 889.7
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 881.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 879.8
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 878.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 877.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 871.1
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 868.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 864.3
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 854.0
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 850.2
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 847.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 846.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 837.8
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 836.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 834.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 829.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 824.3
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 823.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 820.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 819.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 818.2
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 808.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 805.1
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 802.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 801.4
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 795.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 793.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 793.3
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 780.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 765.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 760.1
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 753.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 752.6
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 746.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 744.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 742.2
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 739.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 738.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 737.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 737.2
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 735.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 734.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 733.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 730.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 726.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 726.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 718.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 712.2
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 710.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 710.0
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 708.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 702.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 699.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 697.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 693.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 690.1
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 681.6
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 675.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 671.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 669.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 660.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 659.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 655.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 655.4
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 654.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 651.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 647.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 638.5
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 634.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 628.5
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 628.3
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 626.7
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 626.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 625.5
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 621.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 611.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 609.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 609.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 604.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 603.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 602.5
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 596.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 592.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 580.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 576.2
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 571.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 562.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 562.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 559.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 556.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 544.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 514.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 503.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 501.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 501.0
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 497.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 494.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 489.2
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 477.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 463.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 455.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 443.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 437.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 432.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 426.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 424.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 423.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 418.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 418.1
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 410.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 409.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 405.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 398.7
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 396.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 393.8
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 377.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 375.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 373.7
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 207.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 156.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

495.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 495.8
FF:10169-103B7 60 years, female 570.1
FF:10153-102I9 76 years, female 421.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1408.8
Pig sample Sample description nTPM
Subiculum
nTPM: 1276.2
Samples: 4

Max nTPM: 1723.2
Min nTPM: 1057.8
Sample A Female 1723.2
Sample B Female 1203.0
Sample C Male 1057.8
Sample D Male 1120.9
Dorsal hippocampus
nTPM: 1408.9
Samples: 4

Max nTPM: 2021.3
Min nTPM: 840.7
Sample A Female 2021.3
Sample B Female 1150.1
Sample C Male 1623.3
Sample D Male 840.7
Entorhinal cortex
nTPM: 1261.8
Samples: 4

Max nTPM: 1629.0
Min nTPM: 869.7
Sample A Female 1067.9
Sample B Female 1480.7
Sample C Male 1629.0
Sample D Male 869.7
Ventral hippocampus
nTPM: 1402.8
Samples: 4

Max nTPM: 1635.8
Min nTPM: 1135.1
Sample A Female 1635.8
Sample B Female 1244.3
Sample C Male 1595.9
Sample D Male 1135.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 157.0
Samples: 4

Max nTPM: 182.5
Min nTPM: 137.8
Sample A Male 161.5
Sample B Male 146.0
Sample C Female 182.5
Sample D Female 137.8
Hippocampal formation
nTPM: 158.7
Samples: 4

Max nTPM: 189.9
Min nTPM: 144.7
Sample A Male 189.9
Sample B Male 148.7
Sample C Female 144.7
Sample D Female 151.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
79591593 Antisense, RP_071204_04_D04, Mouse strain C57BL/6J (56 days, male) 1.2
79762548 Antisense, RP_071204_04_D04, Mouse strain C57BL/6J (56 days, male) 0.4

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