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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
393.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 393.3
1911
Female, age 85, right hemisphere
447.7
2529
Female, age 94, left hemisphere
430.1
1898
Male, age 80, left hemisphere
429.5
1855
Male, age 76, left hemisphere
383.2
2148
Female, age 91, left hemisphere
368.0
2621
Female, age 67, right hemisphere
301.2
Dentate gyrus nTPM: 334.7
2530
Female, age 94, left hemisphere
481.8
2010
Male, age 76, both hemispheres
398.4
2528
Male, age 74, both hemispheres
385.5
2246
Female, age 85, both hemispheres
309.8
1927
Female, age 91, both hemispheres
227.1
2531
Female, age 67, both hemispheres
205.9
Entorhinal gyrus nTPM: 245.0
2117
Female, age 91, right hemisphere
418.7
1938
Female, age 85, left hemisphere
255.6
2686
Male, age 75, right hemisphere
251.0
2764
Male, age 80, right hemisphere
218.6
1787
Male, age 76, left hemisphere
192.7
2613
Female, age 94, left hemisphere
133.1
Hippocampus, CA1 nTPM: 279.6
1873
Female, age 85, both hemispheres
393.3
2527
Male, age 74, both hemispheres
307.2
2082
Female, age 91, right hemisphere
271.8
2045
Male, age 76, both hemispheres
241.9
2749
Male, age 80, left hemisphere
183.6
Hippocampus, CA2 nTPM: 301.7
2249
Male, age 74, both hemispheres
404.3
2113
Female, age 91, right hemisphere
331.8
2437
Female, age 94, left hemisphere
316.6
1963
Male, age 80, left hemisphere
303.1
1940
Female, age 85, left hemisphere
253.8
1892
Male, age 76, both hemispheres
200.6
Hippocampus, CA3 nTPM: 259.1
1891
Female, age 85, both hemispheres
393.9
2436
Male, age 74, both hemispheres
284.1
1867
Male, age 76, both hemispheres
283.6
2620
Female, age 94, left hemisphere
222.9
2137
Male, age 80, left hemisphere
202.6
2861
Female, age 67, both hemispheres
167.8
Parahippocampal cortex nTPM: 227.8
2245
Female, age 91, both hemispheres
293.4
2692
Male, age 74, both hemispheres
282.4
2018
Male, age 76, both hemispheres
280.2
2532
Female, age 72, left hemisphere
258.1
1933
Female, age 85, both hemispheres
251.0
1990
Female, age 91, right hemisphere
221.2
1850
Male, age 80, both hemispheres
208.0
2250
Female, age 67, right hemisphere
168.9
2622
Female, age 67, right hemisphere
161.1
2693
Female, age 94, both hemispheres
154.0
Perirhinal gyrus nTPM: 178.1
1794
Male, age 80, right hemisphere
188.2
1847
Female, age 91, left hemisphere
188.0
2521
Female, age 94, right hemisphere
183.3
1841
Female, age 85, right hemisphere
182.7
2848
Male, age 76, right hemisphere
148.2
Subiculum nTPM: 373.7
2042
Male, age 76, both hemispheres
536.2
2729
Female, age 91, right hemisphere
418.6
1901
Male, age 80, both hemispheres
362.0
2438
Female, age 94, left hemisphere
358.9
2619
Male, age 74, both hemispheres
293.3
1977
Female, age 85, both hemispheres
273.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
944.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 944.5
Samples: 255
Max nTPM: 2711.3
Min nTPM: 156.6
Std nTPM: 376.1
Median nTPM: 916.3
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
2711.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
2363.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
2321.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2172.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
2086.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1998.3
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
1883.2
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
1798.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
1697.0
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
1649.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
1572.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
1560.4
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
1545.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
1542.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
1541.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
1498.0
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
1493.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1485.4
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
1471.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
1433.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
1432.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
1419.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
1411.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
1391.5
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
1385.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1382.6
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
1358.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
1350.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
1341.2
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
1338.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
1333.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
1329.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
1319.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
1319.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1316.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
1314.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1313.2
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
1309.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1305.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
1299.2
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
1293.6
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
1286.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
1274.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
1260.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1252.0
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
1246.8
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
1237.7
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
1236.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
1232.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
1225.1
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
1210.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
1202.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
1199.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
1198.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
1192.3
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
1187.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
1187.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
1181.1
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
1179.1
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
1177.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
1147.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
1147.3
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
1147.0
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
1146.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
1143.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1135.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1133.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
1132.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
1117.5
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
1111.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
1111.6
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
1110.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
1098.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
1098.0
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
1096.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
1095.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
1092.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
1090.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
1085.5
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
1082.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
1081.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
1073.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
1066.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
1061.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
1061.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
1059.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
1055.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
1054.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
1041.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
1038.7
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
1037.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
1032.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
1018.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
1017.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
1015.4
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
1004.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
992.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
989.8
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
978.4
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
975.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
974.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
972.8
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
972.7
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
970.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
969.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
963.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
961.9
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
960.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
955.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
953.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
952.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
948.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
947.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
947.0
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
946.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
945.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
943.9
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
939.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
937.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
936.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
933.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
932.9
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
932.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
931.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
929.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
929.2
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
924.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
916.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
911.4
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
908.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
907.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
903.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
898.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
898.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
891.1
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
889.7
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
881.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
879.8
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
878.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
877.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
871.1
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
868.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
864.3
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
854.0
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
850.2
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
847.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
846.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
837.8
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
836.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
834.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
829.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
824.3
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
823.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
820.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
819.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
818.2
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
808.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
805.1
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
802.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
801.4
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
795.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
793.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
793.3
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
780.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
765.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
760.1
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
753.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
752.6
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
746.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
744.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
742.2
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
739.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
738.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
737.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
737.2
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
735.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
734.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
733.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
730.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
726.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
726.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
718.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
712.2
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
710.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
710.0
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
708.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
702.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
699.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
697.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
693.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
690.1
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
681.6
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
675.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
671.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
669.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
660.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
659.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
655.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
655.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
654.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
651.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
647.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
638.5
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
634.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
628.5
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
628.3
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
626.7
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
626.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
625.5
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
621.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
611.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
609.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
609.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
604.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
603.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
602.5
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
596.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
592.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
580.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
576.2
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
571.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
562.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
562.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
559.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
556.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
544.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
514.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
503.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
501.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
501.0
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
497.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
494.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
489.2
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
477.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
463.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
455.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
443.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
437.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
432.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
426.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
424.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
423.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
418.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
418.1
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
410.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
409.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
405.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
398.7
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
396.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
393.8
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
377.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
375.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
373.7
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
207.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
156.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1408.8
Pig sample
Sample description
nTPM
Subiculum nTPM: 1276.2
Samples: 4
Max nTPM: 1723.2
Min nTPM: 1057.8
Sample A
Female
1723.2
Sample B
Female
1203.0
Sample C
Male
1057.8
Sample D
Male
1120.9
Dorsal hippocampus nTPM: 1408.9
Samples: 4
Max nTPM: 2021.3
Min nTPM: 840.7
Sample A
Female
2021.3
Sample B
Female
1150.1
Sample C
Male
1623.3
Sample D
Male
840.7
Entorhinal cortex nTPM: 1261.8
Samples: 4
Max nTPM: 1629.0
Min nTPM: 869.7
Sample A
Female
1067.9
Sample B
Female
1480.7
Sample C
Male
1629.0
Sample D
Male
869.7
Ventral hippocampus nTPM: 1402.8
Samples: 4
Max nTPM: 1635.8
Min nTPM: 1135.1
Sample A
Female
1635.8
Sample B
Female
1244.3
Sample C
Male
1595.9
Sample D
Male
1135.1
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
158.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 157.0
Samples: 4
Max nTPM: 182.5
Min nTPM: 137.8
Sample A
Male
161.5
Sample B
Male
146.0
Sample C
Female
182.5
Sample D
Female
137.8
Hippocampal formation nTPM: 158.7
Samples: 4
Max nTPM: 189.9
Min nTPM: 144.7
Sample A
Male
189.9
Sample B
Male
148.7
Sample C
Female
144.7
Sample D
Female
151.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.