BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2118.5 nTPM
HPA Brain:807.6 nTPM
GTEx:2118.5 nTPM
FANTOM5:1397.3 Scaled Tags Per Million
Mouse:185.2 nTPM
Rat:741.9 nTPM
Pig:2219.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 807.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 565.8
1870 Female, age 42, unknown 749.4
2411 Female, age 72, unknown 740.5
2019 Male, age 18, unknown 720.8
1830 Male, age 51, unknown 682.0
1833 Male, age 53, unknown 643.8
2828 Female, age 72, unknown 585.4
2666 Male, age 74, left hemisphere 409.7
1827 Male, age 72, unknown 388.2
2219 Male, age 76, both hemispheres 371.8
2586 Male, age 75, left hemisphere 366.2
Dorsal raphe nucleus
nTPM: 597.1
2750 Male, age 76, both hemispheres 889.0
1828 Male, age 53, unknown 598.6
2016 Female, age 72, unknown 579.2
2298 Female, age 72, unknown 464.1
2047 Male, age 72, unknown 454.4
Inferior colliculus
nTPM: 425.0
1848 Female, age 42, unknown 462.7
1890 Male, age 53, unknown 444.4
2849 Male, age 72, unknown 398.7
2097 Female, age 72, unknown 394.3
Median raphe nucleus
nTPM: 781.0
2220 Male, age 76, midline 781.0
Periaquaductal grey, anterior
nTPM: 358.2
1795 Male, age 51, unknown 380.8
2502 Female, age 75, unknown 358.8
1947 Male, age 18, unknown 335.2
Periaquaductal grey, dorsal
nTPM: 481.0
1831 Male, age 72, unknown 594.6
2850 Male, age 76, both hemispheres 537.2
2464 Female, age 72, unknown 427.0
1840 Male, age 53, unknown 365.4
Periaquaductal grey, lateral
nTPM: 479.7
2053 Male, age 18, unknown 579.1
2272 Male, age 74, both hemispheres 440.3
2140 Male, age 76, both hemispheres 419.7
Pretectal area
nTPM: 448.4
2273 Male, age 74, both hemispheres 602.9
1815 Male, age 53, unknown 559.7
2316 Male, age 76, right hemisphere 486.4
1817 Female, age 42, unknown 485.1
2224 Female, age 72, unknown 467.2
2667 Female, age 75, unknown 456.1
2407 Male, age 75, both hemispheres 434.3
2825 Male, age 18, unknown 428.5
1944 Female, age 72, unknown 355.3
2007 Male, age 72, unknown 351.1
1816 Male, age 51, unknown 306.3
Red nucleus
nTPM: 807.6
1821 Female, age 72, unknown 1059.8
1865 Male, age 51, unknown 1034.4
1904 Male, age 53, unknown 948.9
2823 Male, age 76, right hemisphere 888.1
1954 Female, age 42, unknown 882.8
2503 Female, age 72, unknown 881.3
2769 Male, age 72, unknown 864.6
2227 Male, age 72, unknown 862.4
2785 Male, age 18, unknown 730.7
2588 Male, age 74, left hemisphere 575.8
2725 Female, age 75, unknown 519.8
2584 Male, age 75, left hemisphere 442.0
Substantia nigra
nTPM: 578.5
2699 Male, age 18, unknown 677.3
2409 Female, age 72, unknown 672.0
1851 Male, age 51, unknown 659.4
2590 Female, age 75, unknown 622.5
1889 Female, age 72, unknown 585.3
2665 Male, age 74, both hemispheres 548.1
1916 Female, age 42, unknown 519.2
1941 Male, age 53, unknown 510.7
2241 Male, age 72, unknown 499.9
2583 Male, age 75, right hemisphere 491.1
Superior colliculus
nTPM: 554.7
1995 Male, age 72, unknown 922.3
1913 Female, age 42, unknown 873.3
2668 Female, age 75, unknown 693.5
2587 Male, age 74, left hemisphere 675.8
1839 Male, age 51, unknown 435.2
2087 Female, age 72, unknown 430.7
1796 Male, age 53, unknown 428.5
2664 Male, age 75, both hemispheres 392.3
1895 Male, age 76, right hemisphere 376.4
2261 Male, age 18, unknown 319.0
Ventral tegmental area
nTPM: 764.8
2223 Female, age 72, unknown 1283.9
2410 Female, age 72, unknown 779.5
2218 Male, age 76, both hemispheres 662.5
2021 Male, age 53, unknown 653.6
1942 Male, age 51, unknown 620.9
1915 Female, age 42, unknown 588.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2118.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2118.5
Samples: 183

Max nTPM: 6361.5
Min nTPM: 255.6
Std nTPM: 976.1
Median nTPM: 1985.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6361.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 5554.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 4666.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 4583.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 4349.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 4190.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 4164.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 3987.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 3834.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 3831.6
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 3804.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1397.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1397.3
FF:10158-103A5 76 years, female 1397.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2219.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2219.3
Samples: 3

Max nTPM: 2986.9
Min nTPM: 1779.3
Sample A Female 2986.9
Sample B Female 1779.3
Sample C Male 1891.6
Midbrain
nTPM: 1427.5
Samples: 3

Max nTPM: 1988.0
Min nTPM: 1015.0
Sample B Female 1988.0
Sample C Male 1279.5
Sample D Male 1015.0
Periaqueductal gray
nTPM: 1716.6
Samples: 3

Max nTPM: 1764.4
Min nTPM: 1626.2
Sample B Female 1759.3
Sample C Male 1764.4
Sample D Male 1626.2
Superior colliculi
nTPM: 1559.3
Samples: 4

Max nTPM: 2133.2
Min nTPM: 950.3
Sample A Female 2133.2
Sample B Female 950.3
Sample C Male 1612.7
Sample D Male 1541.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 185.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 185.2
Samples: 4

Max nTPM: 195.9
Min nTPM: 166.0
Sample A 195.9
Sample B 192.1
Sample C 166.0
Sample D 186.6

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 741.9
Rat sample Sample description nTPM
Midbrain
nTPM: 741.9
Samples: 4

Max nTPM: 747.1
Min nTPM: 737.6
Sample A 742.5
Sample A 740.6
Sample A 747.1
Sample A 737.6

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