MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.3 nTPM
HPA Brain:27.1 nTPM
GTEx:11.3 nTPM
FANTOM5:1.5 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.6
2019 Male, age 18, unknown 10.0
2586 Male, age 75, left hemisphere 9.8
1827 Male, age 72, unknown 9.0
2828 Female, age 72, unknown 7.6
2219 Male, age 76, both hemispheres 7.4
2666 Male, age 74, left hemisphere 7.4
1833 Male, age 53, unknown 7.0
1870 Female, age 42, unknown 6.3
1830 Male, age 51, unknown 6.1
2411 Female, age 72, unknown 5.6
Dorsal raphe nucleus
nTPM: 17.7
2298 Female, age 72, unknown 31.1
2016 Female, age 72, unknown 25.6
1828 Male, age 53, unknown 14.8
2047 Male, age 72, unknown 10.5
2750 Male, age 76, both hemispheres 6.6
Inferior colliculus
nTPM: 9.1
2849 Male, age 72, unknown 10.3
2097 Female, age 72, unknown 8.8
1890 Male, age 53, unknown 8.7
1848 Female, age 42, unknown 8.5
Median raphe nucleus
nTPM: 8.9
2220 Male, age 76, midline 8.9
Periaquaductal grey, anterior
nTPM: 12.8
1795 Male, age 51, unknown 19.3
1947 Male, age 18, unknown 10.5
2502 Female, age 75, unknown 8.5
Periaquaductal grey, dorsal
nTPM: 18.1
2850 Male, age 76, both hemispheres 31.0
1840 Male, age 53, unknown 19.9
1831 Male, age 72, unknown 12.3
2464 Female, age 72, unknown 9.3
Periaquaductal grey, lateral
nTPM: 27.1
2272 Male, age 74, both hemispheres 49.9
2140 Male, age 76, both hemispheres 20.0
2053 Male, age 18, unknown 11.6
Pretectal area
nTPM: 11.4
2273 Male, age 74, both hemispheres 36.3
2224 Female, age 72, unknown 16.1
2667 Female, age 75, unknown 9.8
1817 Female, age 42, unknown 9.3
1816 Male, age 51, unknown 9.2
2007 Male, age 72, unknown 9.2
2825 Male, age 18, unknown 9.0
1944 Female, age 72, unknown 7.3
1815 Male, age 53, unknown 7.1
2316 Male, age 76, right hemisphere 6.1
2407 Male, age 75, both hemispheres 6.0
Red nucleus
nTPM: 6.9
2725 Female, age 75, unknown 9.9
2785 Male, age 18, unknown 9.5
2227 Male, age 72, unknown 7.7
2769 Male, age 72, unknown 7.7
2584 Male, age 75, left hemisphere 7.1
2503 Female, age 72, unknown 6.6
1821 Female, age 72, unknown 6.2
1954 Female, age 42, unknown 5.8
2588 Male, age 74, left hemisphere 5.5
2823 Male, age 76, right hemisphere 5.5
1865 Male, age 51, unknown 5.3
1904 Male, age 53, unknown 5.3
Substantia nigra
nTPM: 8.6
1941 Male, age 53, unknown 11.8
2699 Male, age 18, unknown 11.4
1916 Female, age 42, unknown 11.0
1851 Male, age 51, unknown 9.6
2409 Female, age 72, unknown 7.6
2583 Male, age 75, right hemisphere 7.6
2590 Female, age 75, unknown 7.3
1889 Female, age 72, unknown 7.1
2241 Male, age 72, unknown 6.8
2665 Male, age 74, both hemispheres 6.0
Superior colliculus
nTPM: 9.5
1995 Male, age 72, unknown 13.7
2587 Male, age 74, left hemisphere 13.5
1796 Male, age 53, unknown 10.2
2668 Female, age 75, unknown 10.2
2261 Male, age 18, unknown 9.2
2664 Male, age 75, both hemispheres 8.9
1839 Male, age 51, unknown 7.9
2087 Female, age 72, unknown 7.4
1913 Female, age 42, unknown 7.1
1895 Male, age 76, right hemisphere 6.4
Ventral tegmental area
nTPM: 8.8
1915 Female, age 42, unknown 11.2
2218 Male, age 76, both hemispheres 9.8
2021 Male, age 53, unknown 9.1
1942 Male, age 51, unknown 8.9
2410 Female, age 72, unknown 7.6
2223 Female, age 72, unknown 6.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.3
Samples: 183

Max nTPM: 53.8
Min nTPM: 3.0
Std nTPM: 5.1
Median nTPM: 10.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 53.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 40.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 26.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 20.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 17.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 17.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 17.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 17.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 17.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 17.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 16.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.5
FF:10158-103A5 76 years, female 1.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.5
Sample A Female 1.2
Sample B Female 1.4
Sample C Male 1.1
Sample D Male 0.5
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 2.2
Min nTPM: 0.7
Sample A Female 1.4
Sample B Female 2.2
Sample C Male 0.7
Sample D Male 0.8
Periaqueductal gray
nTPM: 8.2
Samples: 3

Max nTPM: 9.0
Min nTPM: 6.7
Sample B Female 6.7
Sample C Male 9.0
Sample D Male 8.8
Superior colliculi
nTPM: 0.9
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.7
Sample A Female 0.8
Sample B Female 1.4
Sample C Male 0.7
Sample D Male 0.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 6.3
Min nTPM: 3.8
Sample A Male 6.3
Sample B Male 5.0
Sample C Female 3.8
Sample D Female 5.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71492850 Antisense, RP_050913_01_F08, Mouse strain C57BL/6J (56 days, male) 0.0

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