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S100A1
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  • S100A1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:939.3 nTPM
HPA Brain:408.9 nTPM
GTEx:939.3 nTPM
FANTOM5:492.1 Scaled Tags Per Million
Pig:2316.9 nTPM
Mouse:220.1 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

408.9
Sample id Sample description nTPM
Amygdala
nTPM: 408.9
2695 Female, age 67, right hemisphere 578.5
2814 Male, age 76, right hemisphere 480.4
2514 Male, age 75, right hemisphere 356.5
2517 Female, age 94, left hemisphere 324.5
1987 Female, age 91, left hemisphere 304.7
Basal amygdala
nTPM: 385.1
2609 Male, age 75, right hemisphere 674.7
2243 Female, age 91, right hemisphere 431.5
1955 Male, age 76, both hemispheres 374.1
2110 Male, age 80, left hemisphere 371.9
2685 Female, age 94, left hemisphere 287.7
2827 Female, age 67, right hemisphere 170.9
Central amygdala
nTPM: 375.5
1905 Male, age 76, both hemispheres 453.0
2239 Male, age 80, left hemisphere 422.8
2515 Male, age 75, right hemisphere 373.8
2826 Female, age 94, left hemisphere 327.3
2701 Female, age 91, right hemisphere 300.5
Corticomedial amygdala
nTPM: 356.3
2829 Male, age 80, left hemisphere 454.9
2428 Male, age 75, right hemisphere 428.2
2240 Male, age 76, both hemispheres 357.1
2242 Female, age 91, right hemisphere 355.2
2429 Female, age 94, left hemisphere 343.6
2535 Female, age 67, right hemisphere 198.8
Lateral amygdala
nTPM: 356.0
2516 Male, age 75, right hemisphere 562.6
2256 Male, age 80, left hemisphere 388.2
1883 Male, age 76, both hemispheres 377.1
2255 Female, age 91, right hemisphere 366.1
2534 Female, age 94, left hemisphere 256.6
2830 Female, age 67, right hemisphere 185.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

939.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 939.3
Samples: 181

Max nTPM: 2692.9
Min nTPM: 168.5
Std nTPM: 415.1
Median nTPM: 874.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2692.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2475.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2337.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2253.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2165.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2073.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1884.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1708.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1584.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1570.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1535.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1526.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1522.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1515.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1513.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1469.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1457.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1399.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1396.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1390.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1370.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1351.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1329.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1322.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1316.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1308.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1305.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1296.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1286.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1275.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1270.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1263.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1263.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1249.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1245.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1224.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1219.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1214.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1209.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1207.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1190.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1182.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1163.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1158.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1157.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1112.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1112.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1110.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1104.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1101.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1100.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1091.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1090.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1085.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1083.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1078.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1076.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1074.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1072.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1066.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1063.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1032.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1020.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1019.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1015.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1015.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1012.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1010.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1003.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1002.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 999.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 997.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 996.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 993.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 987.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 985.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 956.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 930.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 921.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 918.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 915.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 914.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 908.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 902.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 900.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 889.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 888.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 883.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 877.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 875.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 874.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 855.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 852.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 851.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 851.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 850.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 847.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 847.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 839.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 832.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 822.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 817.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 816.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 816.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 810.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 798.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 793.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 791.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 791.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 790.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 787.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 785.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 783.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 781.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 779.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 767.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 765.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 760.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 760.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 756.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 755.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 752.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 751.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 742.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 741.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 728.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 725.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 720.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 719.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 717.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 716.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 704.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 690.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 684.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 681.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 681.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 658.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 656.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 656.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 654.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 651.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 647.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 633.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 622.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 621.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 612.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 605.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 602.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 599.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 587.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 583.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 578.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 571.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 564.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 561.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 555.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 543.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 536.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 521.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 520.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 495.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 488.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 454.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 452.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 452.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 434.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 428.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 420.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 412.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 398.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 397.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 369.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 366.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 348.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 348.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 345.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 309.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 277.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 272.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 184.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 168.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

492.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 492.1
FF:10151-102I7 76 years, female 492.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2316.9
Pig sample Sample description nTPM
Amygdala
nTPM: 2316.9
Samples: 4

Max nTPM: 2984.7
Min nTPM: 1305.4
Sample A Female 2486.2
Sample B Female 2984.7
Sample C Male 2491.2
Sample D Male 1305.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 220.1
Samples: 4

Max nTPM: 254.6
Min nTPM: 188.6
Sample A Male 188.6
Sample B Male 213.4
Sample C Female 254.6
Sample D Female 223.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
70429411 Antisense, RP_050614_01_F03, Mouse strain C57BL/6J (56 days, male) 0.2

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