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S100A1
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  • S100A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1266.4 nTPM
HPA Brain:490.6 nTPM
GTEx:1266.4 nTPM
FANTOM5:756.8 Scaled Tags Per Million
Pig:6145.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

490.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 419.3
1981 Female, age 72, midline 535.3
2048 Male, age 55, midline 511.3
2816 Male, age 47, midline 429.4
2194 Female, age 79, both hemispheres 312.7
2565 Male, age 75, midline 307.8
Cervical spinal cord, dorsal horn
nTPM: 438.9
2296 Male, age 66, both hemispheres 721.1
2173 Female, age 72, unknown 681.1
1877 Male, age 55, unknown 385.0
2069 Male, age 47, both hemispheres 352.1
2721 Male, age 90, both hemispheres 268.6
2297 Male, age 75, both hemispheres 225.5
Cervical spinal cord, ventral horn
nTPM: 490.6
2098 Female, age 72, unknown 572.4
2068 Male, age 55, unknown 507.5
2480 Male, age 75, both hemispheres 468.9
2820 Female, age 79, both hemispheres 467.2
2809 Male, age 90, both hemispheres 466.8
2295 Male, age 66, both hemispheres 460.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1266.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1266.4
Samples: 204

Max nTPM: 3296.7
Min nTPM: 233.7
Std nTPM: 518.0
Median nTPM: 1190.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 3296.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 3198.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 2673.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 2612.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2371.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 2287.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2268.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 2230.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2211.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2154.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2141.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2140.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2098.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 2082.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2076.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 2051.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2038.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2000.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1984.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1962.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1891.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1882.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1871.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1858.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1850.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1848.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1845.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1840.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1817.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1817.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1812.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1792.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1775.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1766.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1744.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1722.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1720.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1690.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1681.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1681.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1673.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1656.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1643.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1633.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1632.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1627.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1625.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1619.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1617.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1608.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1593.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1573.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1570.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1549.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1543.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1541.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1535.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1525.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1500.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1497.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1458.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1458.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1455.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1452.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1444.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1443.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1441.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1439.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1437.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1430.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1421.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1420.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1418.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1417.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1407.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1399.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1398.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1387.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1361.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1360.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1355.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1354.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1345.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1344.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1330.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1319.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1318.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1318.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1316.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1312.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1307.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1302.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1281.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1278.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1278.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1258.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1228.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1222.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1212.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1211.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1205.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1198.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1182.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1174.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1164.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1162.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1156.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1155.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1153.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1152.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1145.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1139.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1137.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1136.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 1132.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1130.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1130.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1127.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 1116.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1116.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1109.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1103.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1096.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1087.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1076.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1076.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1073.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1071.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1066.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1064.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1059.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1046.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1042.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1036.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1032.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1028.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1024.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1022.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1013.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1011.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1008.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1006.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 997.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 993.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 990.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 989.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 975.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 975.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 971.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 961.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 951.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 949.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 944.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 923.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 913.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 913.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 909.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 896.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 883.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 851.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 827.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 808.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 805.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 797.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 794.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 788.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 788.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 774.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 754.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 750.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 742.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 733.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 732.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 719.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 714.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 703.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 694.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 672.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 668.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 665.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 658.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 641.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 641.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 637.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 617.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 606.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 602.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 586.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 569.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 569.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 546.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 542.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 536.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 529.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 515.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 514.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 459.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 454.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 449.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 389.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 379.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 340.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 310.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 233.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

756.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 756.8
FF:10181-103D1 60 years, female 911.1
FF:10159-103A6 76 years, female 602.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6145.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 4367.6
Samples: 4

Max nTPM: 5204.7
Min nTPM: 3975.9
Sample A Female 4104.3
Sample B Female 5204.7
Sample C Male 4185.6
Sample D Male 3975.9
Ventral spinal cord
nTPM: 6145.7
Samples: 4

Max nTPM: 6459.2
Min nTPM: 5756.9
Sample A Female 5942.0
Sample B Female 6459.2
Sample C Male 5756.9
Sample D Male 6424.6

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