A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.1
nTPM
Monaco:
37.5
nTPM
Schmiedel:
12.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.1
HPA sample
nTPM
Classical monocyte nTPM: 7.9
Samples: 6
Max nTPM: 9.8
Min nTPM: 6.2
P10809_1003
7.6
P10809_1020
8.4
P10809_1039
9.8
P10809_1058
6.4
P10809_1080
6.2
P10809_1107
9.0
Intermediate monocyte nTPM: 9.4
Samples: 6
Max nTPM: 12.0
Min nTPM: 5.5
P10809_1004
11.1
P10809_1023
12.0
P10809_1042
9.2
P10809_1061
5.5
P10809_1081
8.0
P10809_1108
10.6
Non-classical monocyte nTPM: 24.1
Samples: 5
Max nTPM: 77.8
Min nTPM: 8.0
P10809_1005
11.2
P10809_1053
14.2
P10809_1072
77.8
P10809_1082
8.0
P10809_1109
9.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.5
Monaco sample
nTPM
Classical monocyte nTPM: 26.8
Samples: 4
Max nTPM: 35.2
Min nTPM: 14.6
RHH5313_R3680
35.2
RHH5221_R3593
14.6
RHH5250_R3622
27.6
RHH5279_R3651
29.8
Intermediate monocyte nTPM: 32.7
Samples: 4
Max nTPM: 36.5
Min nTPM: 22.1
RHH5314_R3681
36.5
RHH5222_R3594
22.1
RHH5251_R3623
36.1
RHH5280_R3652
35.9
Non-classical monocyte nTPM: 37.5
Samples: 4
Max nTPM: 40.1
Min nTPM: 35.0
RHH5315_R3682
39.1
RHH5223_R3595
35.0
RHH5252_R3624
40.1
RHH5281_R3653
35.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.9
Schmiedel sample id
TPM
Classical monocyte TPM: 10.0
Samples: 91
Max TPM: 15.2
Min TPM: 6.1
MONOCYTES_1
15.2
MONOCYTES_2
13.8
MONOCYTES_3
13.4
MONOCYTES_4
13.2
MONOCYTES_5
13.2
MONOCYTES_6
13.2
MONOCYTES_7
12.9
MONOCYTES_8
12.5
MONOCYTES_9
12.3
MONOCYTES_10
12.3
MONOCYTES_11
12.2
MONOCYTES_12
12.1
MONOCYTES_13
11.9
MONOCYTES_14
11.9
MONOCYTES_15
11.6
MONOCYTES_16
11.4
MONOCYTES_17
11.4
MONOCYTES_18
11.3
MONOCYTES_19
11.3
MONOCYTES_20
11.2
MONOCYTES_21
11.2
MONOCYTES_22
11.2
MONOCYTES_23
11.2
MONOCYTES_24
11.0
MONOCYTES_25
10.9
MONOCYTES_26
10.9
MONOCYTES_27
10.8
MONOCYTES_28
10.8
MONOCYTES_29
10.7
MONOCYTES_30
10.6
MONOCYTES_31
10.5
MONOCYTES_32
10.5
MONOCYTES_33
10.4
MONOCYTES_34
10.4
MONOCYTES_35
10.4
MONOCYTES_36
10.3
MONOCYTES_37
10.3
MONOCYTES_38
10.3
MONOCYTES_39
10.2
MONOCYTES_40
10.2
MONOCYTES_41
10.2
MONOCYTES_42
10.2
MONOCYTES_43
10.1
MONOCYTES_44
10.0
MONOCYTES_45
9.9
MONOCYTES_46
9.9
MONOCYTES_47
9.8
MONOCYTES_48
9.7
MONOCYTES_49
9.7
MONOCYTES_50
9.7
MONOCYTES_51
9.6
MONOCYTES_52
9.6
MONOCYTES_53
9.6
MONOCYTES_54
9.6
MONOCYTES_55
9.6
MONOCYTES_56
9.5
MONOCYTES_57
9.4
MONOCYTES_58
9.4
MONOCYTES_59
9.4
MONOCYTES_60
9.4
MONOCYTES_61
9.3
MONOCYTES_62
9.2
MONOCYTES_63
9.1
MONOCYTES_64
9.0
MONOCYTES_65
8.9
MONOCYTES_66
8.9
MONOCYTES_67
8.9
MONOCYTES_68
8.9
MONOCYTES_69
8.9
MONOCYTES_70
8.8
MONOCYTES_71
8.6
MONOCYTES_72
8.5
MONOCYTES_73
8.3
MONOCYTES_74
8.3
MONOCYTES_75
8.3
MONOCYTES_76
8.3
MONOCYTES_77
8.2
MONOCYTES_78
8.2
MONOCYTES_79
8.1
MONOCYTES_80
8.0
MONOCYTES_81
7.9
MONOCYTES_82
7.8
MONOCYTES_83
7.6
MONOCYTES_84
7.6
MONOCYTES_85
7.5
MONOCYTES_86
7.0
MONOCYTES_87
6.9
MONOCYTES_88
6.8
MONOCYTES_89
6.7
MONOCYTES_90
6.3
MONOCYTES_91
6.1
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Non-classical monocyte TPM: 12.9
Samples: 90
Max TPM: 18.7
Min TPM: 7.6
M2_1
18.7
M2_2
18.4
M2_3
18.3
M2_4
17.9
M2_5
17.3
M2_6
17.0
M2_7
16.9
M2_8
16.8
M2_9
16.6
M2_10
16.3
M2_11
15.9
M2_12
15.4
M2_13
15.3
M2_14
15.2
M2_15
15.2
M2_16
15.1
M2_17
15.1
M2_18
15.0
M2_19
15.0
M2_20
14.9
M2_21
14.7
M2_22
14.6
M2_23
14.4
M2_24
14.3
M2_25
14.2
M2_26
14.1
M2_27
14.0
M2_28
13.8
M2_29
13.8
M2_30
13.8
M2_31
13.8
M2_32
13.8
M2_33
13.8
M2_34
13.7
M2_35
13.6
M2_36
13.6
M2_37
13.6
M2_38
13.6
M2_39
13.5
M2_40
13.5
M2_41
13.4
M2_42
13.2
M2_43
13.1
M2_44
13.0
M2_45
12.9
M2_46
12.9
M2_47
12.9
M2_48
12.6
M2_49
12.6
M2_50
12.5
M2_51
12.4
M2_52
12.3
M2_53
12.2
M2_54
12.2
M2_55
12.2
M2_56
12.2
M2_57
12.2
M2_58
12.1
M2_59
12.0
M2_60
11.7
M2_61
11.6
M2_62
11.5
M2_63
11.4
M2_64
11.3
M2_65
11.3
M2_66
11.3
M2_67
11.1
M2_68
11.1
M2_69
11.0
M2_70
10.8
M2_71
10.7
M2_72
10.6
M2_73
10.6
M2_74
10.6
M2_75
10.6
M2_76
10.5
M2_77
10.3
M2_78
9.9
M2_79
9.8
M2_80
9.7
M2_81
9.7
M2_82
9.6
M2_83
9.5
M2_84
9.2
M2_85
8.9
M2_86
8.8
M2_87
8.8
M2_88
8.7
M2_89
8.3
M2_90
7.6
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