MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:609.3 nTPM
HPA Brain:296.2 nTPM
GTEx:609.3 nTPM
FANTOM5:859.0 Scaled Tags Per Million
Pig:289.9 nTPM
Mouse:19.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 296.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 237.6
1830 Male, age 51, unknown 280.6
1833 Male, age 53, unknown 278.9
2411 Female, age 72, unknown 250.6
1870 Female, age 42, unknown 248.0
2828 Female, age 72, unknown 241.9
2586 Male, age 75, left hemisphere 225.8
2219 Male, age 76, both hemispheres 224.9
2666 Male, age 74, left hemisphere 222.8
2019 Male, age 18, unknown 219.1
1827 Male, age 72, unknown 183.3
Dorsal raphe nucleus
nTPM: 184.8
2750 Male, age 76, both hemispheres 329.9
2016 Female, age 72, unknown 181.8
1828 Male, age 53, unknown 169.9
2047 Male, age 72, unknown 123.6
2298 Female, age 72, unknown 118.9
Inferior colliculus
nTPM: 166.7
2849 Male, age 72, unknown 220.1
1848 Female, age 42, unknown 181.7
1890 Male, age 53, unknown 147.2
2097 Female, age 72, unknown 118.0
Median raphe nucleus
nTPM: 212.4
2220 Male, age 76, midline 212.4
Periaquaductal grey, anterior
nTPM: 153.7
2502 Female, age 75, unknown 162.0
1947 Male, age 18, unknown 149.8
1795 Male, age 51, unknown 149.2
Periaquaductal grey, dorsal
nTPM: 146.4
2464 Female, age 72, unknown 177.9
1831 Male, age 72, unknown 152.8
1840 Male, age 53, unknown 128.7
2850 Male, age 76, both hemispheres 126.0
Periaquaductal grey, lateral
nTPM: 154.9
2053 Male, age 18, unknown 183.5
2272 Male, age 74, both hemispheres 167.5
2140 Male, age 76, both hemispheres 113.7
Pretectal area
nTPM: 150.5
2316 Male, age 76, right hemisphere 203.6
1815 Male, age 53, unknown 181.9
2825 Male, age 18, unknown 166.5
2407 Male, age 75, both hemispheres 158.4
2224 Female, age 72, unknown 157.1
1817 Female, age 42, unknown 151.6
2273 Male, age 74, both hemispheres 142.2
2007 Male, age 72, unknown 132.3
2667 Female, age 75, unknown 130.6
1944 Female, age 72, unknown 119.7
1816 Male, age 51, unknown 111.9
Red nucleus
nTPM: 296.2
2769 Male, age 72, unknown 373.2
2227 Male, age 72, unknown 362.3
2503 Female, age 72, unknown 353.6
2588 Male, age 74, left hemisphere 339.6
1865 Male, age 51, unknown 322.6
2823 Male, age 76, right hemisphere 319.2
1904 Male, age 53, unknown 317.2
2785 Male, age 18, unknown 260.8
1954 Female, age 42, unknown 255.6
1821 Female, age 72, unknown 233.9
2584 Male, age 75, left hemisphere 219.9
2725 Female, age 75, unknown 196.8
Substantia nigra
nTPM: 173.3
2590 Female, age 75, unknown 227.9
2665 Male, age 74, both hemispheres 217.1
2583 Male, age 75, right hemisphere 208.3
2699 Male, age 18, unknown 198.0
1851 Male, age 51, unknown 193.3
1889 Female, age 72, unknown 161.7
1941 Male, age 53, unknown 150.8
1916 Female, age 42, unknown 138.5
2241 Male, age 72, unknown 120.6
2409 Female, age 72, unknown 116.4
Superior colliculus
nTPM: 190.1
1913 Female, age 42, unknown 246.6
1995 Male, age 72, unknown 228.4
2668 Female, age 75, unknown 219.9
2587 Male, age 74, left hemisphere 216.4
1839 Male, age 51, unknown 199.9
1895 Male, age 76, right hemisphere 169.5
1796 Male, age 53, unknown 166.7
2664 Male, age 75, both hemispheres 157.0
2087 Female, age 72, unknown 152.0
2261 Male, age 18, unknown 144.3
Ventral tegmental area
nTPM: 226.3
2223 Female, age 72, unknown 346.1
2218 Male, age 76, both hemispheres 227.8
2410 Female, age 72, unknown 224.9
2021 Male, age 53, unknown 218.3
1942 Male, age 51, unknown 184.7
1915 Female, age 42, unknown 155.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 609.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 609.3
Samples: 183

Max nTPM: 2299.5
Min nTPM: 59.7
Std nTPM: 394.4
Median nTPM: 520.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2299.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2295.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2013.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1638.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1606.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1496.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 1431.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1422.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1368.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1368.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1356.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 859.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 859.0
FF:10158-103A5 76 years, female 859.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 289.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 236.4
Samples: 4

Max nTPM: 356.2
Min nTPM: 155.7
Sample A Female 225.9
Sample B Female 155.7
Sample C Male 207.9
Sample D Male 356.2
Midbrain
nTPM: 289.9
Samples: 4

Max nTPM: 686.9
Min nTPM: 111.8
Sample A Female 686.9
Sample B Female 226.7
Sample C Male 134.1
Sample D Male 111.8
Periaqueductal gray
nTPM: 148.2
Samples: 3

Max nTPM: 157.4
Min nTPM: 130.9
Sample B Female 157.4
Sample C Male 130.9
Sample D Male 156.3
Superior colliculi
nTPM: 181.6
Samples: 4

Max nTPM: 237.7
Min nTPM: 110.6
Sample A Female 171.2
Sample B Female 110.6
Sample C Male 206.7
Sample D Male 237.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 25.5
Min nTPM: 14.2
Sample A Male 25.5
Sample B Male 18.1
Sample C Female 14.2
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73712816 Antisense, RP_051206_02_D12, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo