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  • PAQR6
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:911.8 nTPM
HPA Brain:392.2 nTPM
GTEx:911.8 nTPM
FANTOM5:1186.9 Scaled Tags Per Million
Pig:445.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

392.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 249.2
2816 Male, age 47, midline 294.2
1981 Female, age 72, midline 275.0
2565 Male, age 75, midline 269.8
2194 Female, age 79, both hemispheres 240.0
2048 Male, age 55, midline 166.8
Cervical spinal cord, dorsal horn
nTPM: 235.5
2296 Male, age 66, both hemispheres 413.3
2173 Female, age 72, unknown 281.7
1877 Male, age 55, unknown 221.3
2069 Male, age 47, both hemispheres 200.9
2297 Male, age 75, both hemispheres 156.3
2721 Male, age 90, both hemispheres 139.6
Cervical spinal cord, ventral horn
nTPM: 392.2
2480 Male, age 75, both hemispheres 510.3
2809 Male, age 90, both hemispheres 446.2
2295 Male, age 66, both hemispheres 440.6
2068 Male, age 55, unknown 366.5
2820 Female, age 79, both hemispheres 302.5
2098 Female, age 72, unknown 287.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

911.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 911.8
Samples: 204

Max nTPM: 3662.6
Min nTPM: 168.8
Std nTPM: 528.1
Median nTPM: 796.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 3662.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2837.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2770.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 2728.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 2655.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2222.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2154.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2105.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2002.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1941.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1913.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1807.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1769.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1738.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1713.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1649.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1641.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1638.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1625.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1615.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1601.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1579.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1524.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1510.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1460.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1459.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1456.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1454.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1429.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1424.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1419.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1410.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1403.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1362.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1341.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1332.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1330.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1305.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1257.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1253.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1245.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1191.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1172.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1171.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1169.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1150.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1127.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1122.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1122.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1113.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1109.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1089.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1083.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1061.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1050.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1035.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1024.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1015.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1012.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1011.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1003.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 998.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 996.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 990.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 989.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 982.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 975.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 965.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 964.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 963.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 959.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 957.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 955.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 955.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 946.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 929.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 920.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 909.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 908.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 889.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 884.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 877.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 875.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 868.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 866.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 865.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 864.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 861.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 846.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 844.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 844.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 844.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 842.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 833.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 831.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 828.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 818.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 814.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 809.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 806.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 797.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 797.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 796.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 781.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 780.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 779.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 767.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 763.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 751.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 741.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 740.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 737.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 734.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 730.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 722.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 722.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 715.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 712.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 711.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 698.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 698.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 698.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 693.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 689.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 685.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 674.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 672.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 670.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 668.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 664.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 660.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 660.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 657.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 654.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 650.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 648.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 636.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 634.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 630.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 628.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 612.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 605.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 604.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 603.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 589.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 588.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 584.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 579.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 575.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 574.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 573.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 571.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 570.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 568.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 565.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 563.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 562.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 559.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 546.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 542.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 540.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 540.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 538.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 531.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 530.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 521.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 521.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 516.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 503.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 501.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 500.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 488.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 480.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 473.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 464.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 462.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 458.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 455.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 453.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 453.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 451.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 443.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 433.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 433.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 400.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 397.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 394.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 373.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 357.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 354.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 352.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 315.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 288.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 284.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 274.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 270.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 261.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 243.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 238.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 228.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 224.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 215.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 185.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 168.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1186.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1186.9
FF:10181-103D1 60 years, female 1511.6
FF:10159-103A6 76 years, female 862.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

445.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 353.5
Samples: 4

Max nTPM: 380.5
Min nTPM: 320.3
Sample A Female 320.3
Sample B Female 380.5
Sample C Male 375.1
Sample D Male 338.1
Ventral spinal cord
nTPM: 445.5
Samples: 4

Max nTPM: 560.7
Min nTPM: 381.6
Sample A Female 412.6
Sample B Female 426.9
Sample C Male 381.6
Sample D Male 560.7

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