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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:137.8 nTPM
HPA Brain:192.1 nTPM
GTEx:137.8 nTPM
FANTOM5:160.8 Scaled Tags Per Million
Pig:103.1 nTPM
Mouse:341.9 nTPM
Allen mouse:31.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.1
Sample id Sample description nTPM
Amygdala
nTPM: 188.8
1987 Female, age 91, left hemisphere 205.6
2514 Male, age 75, right hemisphere 205.4
2814 Male, age 76, right hemisphere 193.3
2517 Female, age 94, left hemisphere 183.2
2695 Female, age 67, right hemisphere 156.6
Basal amygdala
nTPM: 152.9
2609 Male, age 75, right hemisphere 179.7
1955 Male, age 76, both hemispheres 168.7
2110 Male, age 80, left hemisphere 167.5
2243 Female, age 91, right hemisphere 144.5
2685 Female, age 94, left hemisphere 140.0
2827 Female, age 67, right hemisphere 116.8
Central amygdala
nTPM: 192.1
2515 Male, age 75, right hemisphere 236.6
2826 Female, age 94, left hemisphere 221.8
1905 Male, age 76, both hemispheres 202.6
2239 Male, age 80, left hemisphere 168.4
2701 Female, age 91, right hemisphere 130.9
Corticomedial amygdala
nTPM: 145.8
2428 Male, age 75, right hemisphere 219.5
2829 Male, age 80, left hemisphere 147.1
2242 Female, age 91, right hemisphere 139.0
2429 Female, age 94, left hemisphere 134.5
2240 Male, age 76, both hemispheres 124.9
2535 Female, age 67, right hemisphere 109.5
Lateral amygdala
nTPM: 171.5
2534 Female, age 94, left hemisphere 201.1
2516 Male, age 75, right hemisphere 187.0
1883 Male, age 76, both hemispheres 178.2
2256 Male, age 80, left hemisphere 165.8
2255 Female, age 91, right hemisphere 157.3
2830 Female, age 67, right hemisphere 139.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 137.8
Samples: 181

Max nTPM: 371.4
Min nTPM: 71.3
Std nTPM: 40.1
Median nTPM: 130.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 371.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 303.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 287.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 238.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 237.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 233.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 230.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 226.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 216.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 214.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 213.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 204.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 196.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 190.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 183.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 183.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 182.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 181.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 180.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 179.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 177.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 176.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 175.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 173.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 172.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 168.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 167.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 166.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 165.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 163.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 161.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 161.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 161.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 159.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 159.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 159.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 159.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 158.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 158.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 156.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 155.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 155.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 154.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 153.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 152.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 151.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 150.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 150.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 149.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 148.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 147.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 147.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 146.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 146.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 145.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 145.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 144.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 144.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 144.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 144.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 143.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 142.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 142.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 141.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 141.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 140.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 140.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 140.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 140.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 139.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 139.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 139.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 139.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 138.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 136.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 135.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 135.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 134.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 133.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 133.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 133.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 132.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 132.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 132.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 131.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 131.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 131.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 131.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 131.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 130.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 130.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 130.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 130.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 130.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 129.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 129.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 129.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 128.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 127.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 127.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 127.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 126.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 125.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 125.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 124.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 124.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 124.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 123.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 123.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 123.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 122.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 121.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 121.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 121.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 121.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 121.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 121.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 120.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 120.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 119.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 119.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 119.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 118.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 118.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 118.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 117.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 117.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 116.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 116.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 116.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 115.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 115.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 115.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 115.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 115.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 115.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 114.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 113.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 113.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 112.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 112.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 111.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 111.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 111.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 109.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 109.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 106.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 106.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 106.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 106.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 106.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 104.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 104.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 103.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 102.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 102.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 102.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 101.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 101.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 99.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 97.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 97.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 97.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 96.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 96.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 95.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 95.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 93.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 93.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 93.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 91.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 90.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 89.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 89.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 89.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 85.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 85.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 83.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 76.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

160.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 160.8
FF:10151-102I7 76 years, female 160.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.1
Pig sample Sample description nTPM
Amygdala
nTPM: 103.1
Samples: 4

Max nTPM: 125.3
Min nTPM: 92.5
Sample A Female 125.3
Sample B Female 99.4
Sample C Male 92.5
Sample D Male 95.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 342.0
Samples: 4

Max nTPM: 371.3
Min nTPM: 330.9
Sample A Male 371.3
Sample B Male 330.9
Sample C Female 333.2
Sample D Female 332.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

31.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.7
293263 Antisense, RP_040617_01_A10, Mouse strain C57BL/6J (56 days, male) 31.7

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