MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.8 nTPM
HPA Brain:80.1 nTPM
GTEx:42.8 nTPM
FANTOM5:59.4 Scaled Tags Per Million
Pig:31.5 nTPM
Mouse:4.7 nTPM
Allen mouse:11.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.1
2586 Male, age 75, left hemisphere 154.0
2828 Female, age 72, unknown 118.5
2666 Male, age 74, left hemisphere 75.1
1827 Male, age 72, unknown 65.7
2411 Female, age 72, unknown 55.6
2019 Male, age 18, unknown 53.5
1870 Female, age 42, unknown 51.8
1830 Male, age 51, unknown 50.8
1833 Male, age 53, unknown 50.6
2219 Male, age 76, both hemispheres 45.2
Dorsal raphe nucleus
nTPM: 68.3
2016 Female, age 72, unknown 86.8
2298 Female, age 72, unknown 76.3
2047 Male, age 72, unknown 74.4
1828 Male, age 53, unknown 71.7
2750 Male, age 76, both hemispheres 32.3
Inferior colliculus
nTPM: 62.0
1848 Female, age 42, unknown 65.9
2849 Male, age 72, unknown 63.2
1890 Male, age 53, unknown 62.9
2097 Female, age 72, unknown 55.9
Median raphe nucleus
nTPM: 38.0
2220 Male, age 76, midline 38.0
Periaquaductal grey, anterior
nTPM: 77.1
2502 Female, age 75, unknown 88.2
1795 Male, age 51, unknown 83.3
1947 Male, age 18, unknown 59.9
Periaquaductal grey, dorsal
nTPM: 78.2
2850 Male, age 76, both hemispheres 90.4
1840 Male, age 53, unknown 87.6
1831 Male, age 72, unknown 67.8
2464 Female, age 72, unknown 66.9
Periaquaductal grey, lateral
nTPM: 80.1
2053 Male, age 18, unknown 100.7
2140 Male, age 76, both hemispheres 88.0
2272 Male, age 74, both hemispheres 51.6
Pretectal area
nTPM: 71.1
2407 Male, age 75, both hemispheres 98.6
1944 Female, age 72, unknown 86.9
1816 Male, age 51, unknown 83.0
2273 Male, age 74, both hemispheres 73.4
1815 Male, age 53, unknown 73.0
2825 Male, age 18, unknown 68.7
1817 Female, age 42, unknown 65.0
2007 Male, age 72, unknown 63.7
2316 Male, age 76, right hemisphere 61.9
2667 Female, age 75, unknown 61.6
2224 Female, age 72, unknown 46.2
Red nucleus
nTPM: 68.4
2584 Male, age 75, left hemisphere 87.5
2503 Female, age 72, unknown 79.1
2588 Male, age 74, left hemisphere 78.8
1954 Female, age 42, unknown 76.3
2785 Male, age 18, unknown 71.8
2725 Female, age 75, unknown 69.2
2227 Male, age 72, unknown 68.9
2769 Male, age 72, unknown 68.9
1904 Male, age 53, unknown 60.4
1865 Male, age 51, unknown 57.5
1821 Female, age 72, unknown 56.7
2823 Male, age 76, right hemisphere 46.0
Substantia nigra
nTPM: 61.4
2583 Male, age 75, right hemisphere 81.7
2699 Male, age 18, unknown 69.7
2590 Female, age 75, unknown 68.5
1851 Male, age 51, unknown 67.0
2665 Male, age 74, both hemispheres 66.0
1916 Female, age 42, unknown 61.7
1889 Female, age 72, unknown 59.6
1941 Male, age 53, unknown 49.9
2241 Male, age 72, unknown 46.4
2409 Female, age 72, unknown 43.5
Superior colliculus
nTPM: 80.1
2664 Male, age 75, both hemispheres 141.9
1995 Male, age 72, unknown 102.1
1913 Female, age 42, unknown 85.4
2087 Female, age 72, unknown 81.2
1796 Male, age 53, unknown 80.9
2261 Male, age 18, unknown 75.7
2587 Male, age 74, left hemisphere 68.0
2668 Female, age 75, unknown 63.9
1839 Male, age 51, unknown 62.6
1895 Male, age 76, right hemisphere 38.9
Ventral tegmental area
nTPM: 59.7
1942 Male, age 51, unknown 74.9
2021 Male, age 53, unknown 72.6
2410 Female, age 72, unknown 61.3
1915 Female, age 42, unknown 60.3
2223 Female, age 72, unknown 51.2
2218 Male, age 76, both hemispheres 37.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.8
Samples: 183

Max nTPM: 128.0
Min nTPM: 7.7
Std nTPM: 21.2
Median nTPM: 39.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 128.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 125.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 120.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 91.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 85.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 85.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 83.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 82.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 81.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 78.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.4
FF:10158-103A5 76 years, female 59.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.5
Samples: 4

Max nTPM: 34.9
Min nTPM: 28.1
Sample A Female 33.0
Sample B Female 28.1
Sample C Male 30.1
Sample D Male 34.9
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 60.0
Min nTPM: 19.8
Sample A Female 60.0
Sample B Female 19.8
Sample C Male 21.8
Sample D Male 20.0
Periaqueductal gray
nTPM: 26.8
Samples: 3

Max nTPM: 31.4
Min nTPM: 20.2
Sample B Female 20.2
Sample C Male 31.4
Sample D Male 28.7
Superior colliculi
nTPM: 20.6
Samples: 4

Max nTPM: 23.5
Min nTPM: 16.7
Sample A Female 23.5
Sample B Female 16.7
Sample C Male 19.7
Sample D Male 22.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.7
Sample A Male 5.5
Sample B Male 4.9
Sample C Female 4.5
Sample D Female 3.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.6
77620411 Antisense, RP_070205_01_G06, Mouse strain C57BL/6J (56 days, male) 11.7
227747 Antisense, RP_040609_01_D05, Mouse strain C57BL/6J (56 days, male) 11.4
276272 Antisense, RP_040609_01_D05, Mouse strain C57BL/6J (56 days, male) 8.3
77414915 Antisense, RP_070205_01_G06, Mouse strain C57BL/6J (56 days, male) 1.4

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