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BETA
  • SUMMARY

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  • RPL29
EVOLUTIONARY URINARY BLADDER Show tissue menu
BRAIN28 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM10 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE12 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CORPUS CALLOSUM DORSAL ROOT GANGLION ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
MOTOR AND PREFRONTAL CORTEX OCCIPITAL CORTEX OLFACTORY BULB PONS RETROSPLENIAL AND CINGULATE CORTEX SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES PERICARDIUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Kidney & Urinary bladder
Evolutionary methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1292.2 nTPM
HPA:902.7 nTPM
GTEx:1292.2 nTPM
FANTOM5:249.9 Scaled Tags Per Million
Mouse:1252.4 nTPM
Rat:420.2 nTPM
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA069064
Urothelial cells Medium


URINARY BLADDER - PROTEINTALKS DB MS
Median intensity 8189
Sample Intensity
Urinary bladder_01
8189

URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

902.7
overview
Male, age 74
Urinary bladder sample 264
nTPM: 859.1
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 930.5
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 79
Urinary bladder sample 1597
nTPM: 930.5
N/A
Male, age 52
Urinary bladder sample 1598
nTPM: 890.7

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1292.2
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 1292.2
Samples: 77

Max nTPM: 2238.7
Min nTPM: 880.8
Std nTPM: 235.4
Median nTPM: 1270.1
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 2238.7
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 1982.3
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 1907.2
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 1631.9
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 1612.7
GTEX-Q734-1226-SM-GRR21 40-49 years, female 1602.9
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 1595.2
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 1593.6
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 1573.0
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 1567.6
GTEX-R45C-2426-SM-HL11G 60-69 years, female 1531.7
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 1507.7
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 1484.4
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 1476.8
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 1435.8
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 1430.5
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 1428.0
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 1426.1
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 1424.0
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 1410.7
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 1387.2
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 1372.9
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 1367.5
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 1367.4
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 1359.7
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 1355.6
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 1355.4
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 1340.1
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 1334.9
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 1330.4
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 1316.6
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 1308.9
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 1294.3
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 1286.1
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 1285.3
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 1281.8
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 1274.1
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 1271.9
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 1270.1
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 1264.5
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 1264.3
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 1260.3
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 1250.2
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 1244.3
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 1240.5
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 1236.3
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 1222.4
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 1207.0
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 1201.8
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 1196.2
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 1189.9
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 1173.5
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 1147.6
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 1144.1
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 1144.0
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 1140.1
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 1134.6
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 1125.4
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 1119.0
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 1111.9
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 1111.6
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 1109.5
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 1108.0
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 1106.3
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 1072.6
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 1069.8
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 1051.1
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 1045.0
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 1034.4
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 1009.4
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 1008.9
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 995.0
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 991.1
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 987.5
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 940.6
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 937.4
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 880.8
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

249.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 249.9
FF:10011-101C2 55,58,79 years, mixed 249.9

URINARY BLADDER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1252.4
Mouse sample Sample description nTPM
Urinary bladder
nTPM: 1252.5
Samples: 4

Max nTPM: 1381.2
Min nTPM: 1039.0
Sample D 1330.3
Sample A 1381.2
Sample B 1039.0
Sample C 1259.3

URINARY BLADDER - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

420.2
Rat sample Sample description nTPM
Urinary bladder
nTPM: 420.2
Samples: 4

Max nTPM: 447.2
Min nTPM: 379.3
Sample A 423.2
Sample A 379.3
Sample A 447.2
Sample A 431.2

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