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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1644.0 nTPM
GTEx:1644.0 nTPM
FANTOM5:241.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA069064
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1644.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1644.0
Samples: 170

Max nTPM: 4471.4
Min nTPM: 819.3
Std nTPM: 474.1
Median nTPM: 1579.3
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 4471.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 3754.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2945.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2783.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2740.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2624.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 2590.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2543.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2468.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2262.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2260.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2249.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2153.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 2149.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2135.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2119.3
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2102.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2094.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2082.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2082.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2070.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2067.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2044.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2022.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2015.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2001.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1994.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1992.1
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1986.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1980.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1973.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1957.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1953.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1947.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1945.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1944.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1938.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1922.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1888.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1881.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1880.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1876.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1875.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1873.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1859.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1846.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1839.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1838.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1830.4
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1825.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1821.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1816.5
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1813.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1801.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1797.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1786.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1769.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1767.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1759.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1759.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1725.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1721.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1719.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1717.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1715.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1711.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1707.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1700.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1692.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1690.2
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1660.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1652.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1651.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1637.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1624.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1617.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1617.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1616.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1613.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1613.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 1609.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1604.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1602.9
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1591.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1580.3
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1578.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1577.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1574.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1573.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1560.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1559.5
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1548.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1541.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1535.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1532.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1528.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1526.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1525.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1510.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1507.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1502.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1496.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1494.5
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1494.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1493.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1481.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1480.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1479.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1478.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1472.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1442.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1439.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1434.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1429.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1411.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1408.6
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1394.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1387.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1382.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1369.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1365.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1361.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 1346.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1346.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1333.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1332.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1329.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1327.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1323.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1319.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1312.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1305.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1303.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1302.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1296.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1295.9
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1292.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1287.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1267.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1257.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1253.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1250.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1245.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1222.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1218.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1217.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1207.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1206.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1195.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1184.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1168.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1157.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1152.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1141.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1112.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1098.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1085.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1081.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1080.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1067.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1063.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1057.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1055.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 993.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 962.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 945.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 935.9
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 935.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 929.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 819.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 241.8
FF:10204-103F6 68 years, female 241.8

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