A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
29.6
nTPM
Schmiedel:
71.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
Classical monocyte nTPM: 2.7
Samples: 6
Max nTPM: 5.8
Min nTPM: 0.9
P10809_1003
5.8
P10809_1020
2.0
P10809_1039
0.9
P10809_1058
2.7
P10809_1080
1.4
P10809_1107
3.2
Intermediate monocyte nTPM: 2.0
Samples: 6
Max nTPM: 3.3
Min nTPM: 1.0
P10809_1004
3.3
P10809_1023
2.0
P10809_1042
1.0
P10809_1061
1.5
P10809_1081
1.3
P10809_1108
3.1
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 2.7
Min nTPM: 0.5
P10809_1005
2.7
P10809_1053
1.0
P10809_1072
1.0
P10809_1082
0.5
P10809_1109
1.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.6
Monaco sample
nTPM
Classical monocyte nTPM: 29.6
Samples: 4
Max nTPM: 48.9
Min nTPM: 18.0
RHH5313_R3680
18.0
RHH5221_R3593
48.9
RHH5250_R3622
33.0
RHH5279_R3651
18.4
Intermediate monocyte nTPM: 20.7
Samples: 4
Max nTPM: 35.7
Min nTPM: 11.7
RHH5314_R3681
17.1
RHH5222_R3594
35.7
RHH5251_R3623
11.7
RHH5280_R3652
18.2
Non-classical monocyte nTPM: 19.3
Samples: 4
Max nTPM: 26.2
Min nTPM: 15.2
RHH5315_R3682
15.2
RHH5223_R3595
26.2
RHH5252_R3624
20.1
RHH5281_R3653
15.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.1
Schmiedel sample id
TPM
Classical monocyte TPM: 71.1
Samples: 91
Max TPM: 120.8
Min TPM: 34.8
MONOCYTES_1
120.8
MONOCYTES_2
120.5
MONOCYTES_3
112.2
MONOCYTES_4
108.2
MONOCYTES_5
108.2
MONOCYTES_6
104.8
MONOCYTES_7
102.3
MONOCYTES_8
99.2
MONOCYTES_9
99.1
MONOCYTES_10
96.9
MONOCYTES_11
94.7
MONOCYTES_12
93.4
MONOCYTES_13
91.8
MONOCYTES_14
91.6
MONOCYTES_15
89.0
MONOCYTES_16
89.0
MONOCYTES_17
85.8
MONOCYTES_18
84.1
MONOCYTES_19
84.0
MONOCYTES_20
83.2
MONOCYTES_21
83.2
MONOCYTES_22
83.1
MONOCYTES_23
81.9
MONOCYTES_24
81.6
MONOCYTES_25
80.7
MONOCYTES_26
79.3
MONOCYTES_27
79.3
MONOCYTES_28
78.9
MONOCYTES_29
78.7
MONOCYTES_30
78.1
MONOCYTES_31
77.9
MONOCYTES_32
77.5
MONOCYTES_33
76.7
MONOCYTES_34
76.6
MONOCYTES_35
76.1
MONOCYTES_36
75.9
MONOCYTES_37
75.6
MONOCYTES_38
75.5
MONOCYTES_39
75.2
MONOCYTES_40
75.2
MONOCYTES_41
74.4
MONOCYTES_42
73.3
MONOCYTES_43
72.9
MONOCYTES_44
71.9
MONOCYTES_45
71.7
MONOCYTES_46
69.8
MONOCYTES_47
69.4
MONOCYTES_48
68.6
MONOCYTES_49
68.1
MONOCYTES_50
67.7
MONOCYTES_51
67.5
MONOCYTES_52
66.8
MONOCYTES_53
66.5
MONOCYTES_54
66.4
MONOCYTES_55
64.9
MONOCYTES_56
64.2
MONOCYTES_57
64.0
MONOCYTES_58
64.0
MONOCYTES_59
63.7
MONOCYTES_60
63.5
MONOCYTES_61
62.9
MONOCYTES_62
62.7
MONOCYTES_63
60.8
MONOCYTES_64
60.3
MONOCYTES_65
58.2
MONOCYTES_66
57.7
MONOCYTES_67
56.5
MONOCYTES_68
55.7
MONOCYTES_69
55.5
MONOCYTES_70
55.5
MONOCYTES_71
55.0
MONOCYTES_72
54.8
MONOCYTES_73
53.2
MONOCYTES_74
52.5
MONOCYTES_75
52.3
MONOCYTES_76
51.3
MONOCYTES_77
50.4
MONOCYTES_78
50.2
MONOCYTES_79
49.9
MONOCYTES_80
49.6
MONOCYTES_81
48.2
MONOCYTES_82
48.0
MONOCYTES_83
47.9
MONOCYTES_84
46.9
MONOCYTES_85
46.6
MONOCYTES_86
46.5
MONOCYTES_87
46.1
MONOCYTES_88
40.2
MONOCYTES_89
40.0
MONOCYTES_90
36.8
MONOCYTES_91
34.8
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Non-classical monocyte TPM: 36.8
Samples: 90
Max TPM: 67.2
Min TPM: 12.8
M2_1
67.2
M2_2
59.2
M2_3
58.1
M2_4
57.0
M2_5
56.7
M2_6
56.4
M2_7
54.8
M2_8
54.7
M2_9
53.5
M2_10
52.9
M2_11
51.5
M2_12
51.2
M2_13
50.4
M2_14
49.1
M2_15
48.9
M2_16
47.6
M2_17
47.3
M2_18
46.7
M2_19
46.2
M2_20
46.2
M2_21
45.7
M2_22
44.9
M2_23
43.7
M2_24
43.4
M2_25
43.2
M2_26
42.9
M2_27
42.5
M2_28
42.4
M2_29
42.3
M2_30
42.1
M2_31
41.9
M2_32
41.6
M2_33
41.2
M2_34
41.0
M2_35
40.4
M2_36
40.2
M2_37
39.5
M2_38
39.5
M2_39
39.0
M2_40
38.4
M2_41
37.8
M2_42
37.4
M2_43
37.0
M2_44
36.9
M2_45
36.9
M2_46
36.8
M2_47
36.1
M2_48
35.9
M2_49
35.9
M2_50
35.6
M2_51
35.3
M2_52
35.2
M2_53
34.1
M2_54
33.5
M2_55
33.2
M2_56
32.9
M2_57
32.4
M2_58
32.4
M2_59
31.9
M2_60
31.4
M2_61
31.4
M2_62
30.5
M2_63
30.4
M2_64
28.9
M2_65
28.9
M2_66
28.9
M2_67
28.6
M2_68
28.2
M2_69
27.7
M2_70
27.1
M2_71
26.0
M2_72
25.8
M2_73
25.1
M2_74
24.8
M2_75
24.7
M2_76
24.2
M2_77
23.9
M2_78
23.7
M2_79
22.8
M2_80
22.6
M2_81
22.4
M2_82
22.2
M2_83
20.0
M2_84
19.9
M2_85
19.8
M2_86
18.8
M2_87
17.3
M2_88
15.5
M2_89
14.6
M2_90
12.8
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