A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
312.6
nTPM
Monaco:
70.9
nTPM
Schmiedel:
271.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
312.6
HPA sample
nTPM
Classical monocyte nTPM: 312.6
Samples: 6
Max nTPM: 396.2
Min nTPM: 180.3
P10809_1003
346.7
P10809_1020
307.5
P10809_1039
396.2
P10809_1058
248.9
P10809_1080
180.3
P10809_1107
396.0
Intermediate monocyte nTPM: 138.6
Samples: 6
Max nTPM: 203.6
Min nTPM: 73.6
P10809_1004
128.2
P10809_1023
180.7
P10809_1042
136.2
P10809_1061
109.5
P10809_1081
73.6
P10809_1108
203.6
Non-classical monocyte nTPM: 68.7
Samples: 5
Max nTPM: 100.1
Min nTPM: 21.7
P10809_1005
100.1
P10809_1053
53.6
P10809_1072
71.1
P10809_1082
21.7
P10809_1109
96.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.9
Monaco sample
nTPM
Classical monocyte nTPM: 70.9
Samples: 4
Max nTPM: 127.7
Min nTPM: 48.7
RHH5313_R3680
127.7
RHH5221_R3593
51.2
RHH5250_R3622
56.0
RHH5279_R3651
48.7
Intermediate monocyte nTPM: 35.7
Samples: 4
Max nTPM: 75.2
Min nTPM: 19.8
RHH5314_R3681
75.2
RHH5222_R3594
26.6
RHH5251_R3623
19.8
RHH5280_R3652
21.0
Non-classical monocyte nTPM: 10.7
Samples: 4
Max nTPM: 17.9
Min nTPM: 4.1
RHH5315_R3682
10.4
RHH5223_R3595
4.1
RHH5252_R3624
17.9
RHH5281_R3653
10.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
271.8
Schmiedel sample id
TPM
Classical monocyte TPM: 271.8
Samples: 91
Max TPM: 422.3
Min TPM: 164.2
MONOCYTES_1
422.3
MONOCYTES_2
386.2
MONOCYTES_3
380.6
MONOCYTES_4
347.9
MONOCYTES_5
340.6
MONOCYTES_6
339.4
MONOCYTES_7
338.7
MONOCYTES_8
337.9
MONOCYTES_9
336.6
MONOCYTES_10
335.5
MONOCYTES_11
333.3
MONOCYTES_12
332.4
MONOCYTES_13
318.7
MONOCYTES_14
315.1
MONOCYTES_15
314.8
MONOCYTES_16
312.8
MONOCYTES_17
311.5
MONOCYTES_18
310.1
MONOCYTES_19
309.1
MONOCYTES_20
306.5
MONOCYTES_21
301.7
MONOCYTES_22
291.7
MONOCYTES_23
290.5
MONOCYTES_24
289.2
MONOCYTES_25
289.1
MONOCYTES_26
287.8
MONOCYTES_27
286.9
MONOCYTES_28
285.4
MONOCYTES_29
281.6
MONOCYTES_30
280.6
MONOCYTES_31
280.4
MONOCYTES_32
279.6
MONOCYTES_33
278.7
MONOCYTES_34
278.7
MONOCYTES_35
278.6
MONOCYTES_36
277.7
MONOCYTES_37
277.5
MONOCYTES_38
277.3
MONOCYTES_39
275.3
MONOCYTES_40
274.5
MONOCYTES_41
274.3
MONOCYTES_42
272.4
MONOCYTES_43
271.3
MONOCYTES_44
271.2
MONOCYTES_45
271.0
MONOCYTES_46
270.3
MONOCYTES_47
268.7
MONOCYTES_48
268.4
MONOCYTES_49
266.2
MONOCYTES_50
264.6
MONOCYTES_51
264.1
MONOCYTES_52
262.5
MONOCYTES_53
262.4
MONOCYTES_54
262.2
MONOCYTES_55
262.0
MONOCYTES_56
261.5
MONOCYTES_57
261.5
MONOCYTES_58
261.1
MONOCYTES_59
255.5
MONOCYTES_60
255.4
MONOCYTES_61
254.6
MONOCYTES_62
251.4
MONOCYTES_63
250.9
MONOCYTES_64
250.2
MONOCYTES_65
249.7
MONOCYTES_66
248.5
MONOCYTES_67
248.2
MONOCYTES_68
245.4
MONOCYTES_69
245.0
MONOCYTES_70
243.9
MONOCYTES_71
242.3
MONOCYTES_72
240.0
MONOCYTES_73
240.0
MONOCYTES_74
238.1
MONOCYTES_75
237.3
MONOCYTES_76
236.9
MONOCYTES_77
234.1
MONOCYTES_78
232.8
MONOCYTES_79
228.3
MONOCYTES_80
227.4
MONOCYTES_81
223.0
MONOCYTES_82
221.3
MONOCYTES_83
220.4
MONOCYTES_84
205.6
MONOCYTES_85
203.7
MONOCYTES_86
200.2
MONOCYTES_87
197.1
MONOCYTES_88
195.3
MONOCYTES_89
186.6
MONOCYTES_90
174.4
MONOCYTES_91
164.2
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Non-classical monocyte TPM: 52.2
Samples: 90
Max TPM: 109.1
Min TPM: 20.0
M2_1
109.1
M2_2
103.0
M2_3
102.4
M2_4
93.1
M2_5
82.5
M2_6
78.3
M2_7
77.5
M2_8
76.0
M2_9
74.2
M2_10
72.6
M2_11
71.7
M2_12
71.0
M2_13
70.4
M2_14
69.8
M2_15
65.7
M2_16
65.1
M2_17
64.9
M2_18
64.8
M2_19
64.7
M2_20
62.7
M2_21
60.6
M2_22
60.6
M2_23
60.0
M2_24
59.8
M2_25
58.6
M2_26
57.7
M2_27
57.6
M2_28
56.9
M2_29
56.9
M2_30
56.4
M2_31
56.3
M2_32
55.9
M2_33
55.1
M2_34
54.9
M2_35
54.8
M2_36
54.8
M2_37
54.7
M2_38
54.4
M2_39
53.8
M2_40
52.9
M2_41
52.5
M2_42
51.7
M2_43
51.7
M2_44
51.0
M2_45
50.9
M2_46
50.7
M2_47
49.7
M2_48
49.6
M2_49
48.0
M2_50
47.8
M2_51
47.3
M2_52
47.3
M2_53
47.1
M2_54
46.9
M2_55
45.7
M2_56
45.5
M2_57
45.5
M2_58
44.3
M2_59
44.1
M2_60
43.9
M2_61
43.7
M2_62
43.5
M2_63
43.2
M2_64
42.9
M2_65
42.0
M2_66
41.8
M2_67
40.5
M2_68
39.7
M2_69
39.2
M2_70
39.1
M2_71
38.8
M2_72
37.8
M2_73
37.2
M2_74
37.0
M2_75
36.5
M2_76
35.8
M2_77
35.8
M2_78
35.2
M2_79
34.1
M2_80
33.9
M2_81
31.4
M2_82
31.4
M2_83
30.9
M2_84
30.2
M2_85
28.9
M2_86
28.5
M2_87
28.3
M2_88
26.8
M2_89
26.2
M2_90
20.0
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