HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.3 nTPM
HPA Brain:50.8 nTPM
GTEx:58.3 nTPM
FANTOM5:27.7 Scaled Tags Per Million
Pig:62.5 nTPM
Mouse:84.3 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 50.8
Sample id Sample description nTPM
Hippocampus
nTPM: 44.5
1898 Male, age 80, left hemisphere 56.0
2621 Female, age 67, right hemisphere 44.7
2529 Female, age 94, left hemisphere 44.2
2148 Female, age 91, left hemisphere 43.1
1855 Male, age 76, left hemisphere 42.0
1911 Female, age 85, right hemisphere 37.2
Dentate gyrus
nTPM: 46.7
2530 Female, age 94, left hemisphere 53.0
2010 Male, age 76, both hemispheres 48.5
1927 Female, age 91, both hemispheres 46.9
2531 Female, age 67, both hemispheres 45.2
2528 Male, age 74, both hemispheres 45.1
2246 Female, age 85, both hemispheres 41.8
Entorhinal gyrus
nTPM: 46.3
2764 Male, age 80, right hemisphere 53.7
1938 Female, age 85, left hemisphere 49.4
1787 Male, age 76, left hemisphere 46.9
2613 Female, age 94, left hemisphere 46.7
2117 Female, age 91, right hemisphere 44.4
2686 Male, age 75, right hemisphere 36.5
Hippocampus, CA1
nTPM: 47.8
2749 Male, age 80, left hemisphere 70.2
1873 Female, age 85, both hemispheres 45.9
2527 Male, age 74, both hemispheres 42.6
2045 Male, age 76, both hemispheres 41.5
2082 Female, age 91, right hemisphere 38.8
Hippocampus, CA2
nTPM: 47.7
1963 Male, age 80, left hemisphere 55.7
1892 Male, age 76, both hemispheres 48.3
2249 Male, age 74, both hemispheres 47.9
1940 Female, age 85, left hemisphere 47.8
2437 Female, age 94, left hemisphere 46.3
2113 Female, age 91, right hemisphere 40.0
Hippocampus, CA3
nTPM: 48.6
2137 Male, age 80, left hemisphere 58.3
2620 Female, age 94, left hemisphere 52.1
2436 Male, age 74, both hemispheres 49.3
1867 Male, age 76, both hemispheres 46.4
2861 Female, age 67, both hemispheres 43.7
1891 Female, age 85, both hemispheres 41.9
Parahippocampal cortex
nTPM: 42.7
1850 Male, age 80, both hemispheres 53.8
1990 Female, age 91, right hemisphere 45.0
2250 Female, age 67, right hemisphere 44.3
2245 Female, age 91, both hemispheres 44.2
1933 Female, age 85, both hemispheres 44.0
2532 Female, age 72, left hemisphere 43.1
2693 Female, age 94, both hemispheres 42.0
2018 Male, age 76, both hemispheres 40.1
2692 Male, age 74, both hemispheres 36.6
2622 Female, age 67, right hemisphere 34.2
Perirhinal gyrus
nTPM: 50.8
1794 Male, age 80, right hemisphere 62.4
1847 Female, age 91, left hemisphere 53.7
2521 Female, age 94, right hemisphere 48.9
1841 Female, age 85, right hemisphere 48.8
2848 Male, age 76, right hemisphere 40.2
Subiculum
nTPM: 42.8
1901 Male, age 80, both hemispheres 52.7
1977 Female, age 85, both hemispheres 50.5
2619 Male, age 74, both hemispheres 42.2
2042 Male, age 76, both hemispheres 38.9
2729 Female, age 91, right hemisphere 38.6
2438 Female, age 94, left hemisphere 33.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 58.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 58.3
Samples: 255

Max nTPM: 111.0
Min nTPM: 34.4
Std nTPM: 11.4
Median nTPM: 57.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 111.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 103.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 93.2
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 88.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 88.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 86.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 84.4
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 82.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 82.0
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 80.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 79.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.7
FF:10169-103B7 60 years, female 29.0
FF:10153-102I9 76 years, female 26.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 62.5
Pig sample Sample description nTPM
Subiculum
nTPM: 40.2
Samples: 4

Max nTPM: 51.2
Min nTPM: 33.1
Sample A Female 51.2
Sample B Female 33.7
Sample C Male 42.6
Sample D Male 33.1
Dorsal hippocampus
nTPM: 62.5
Samples: 4

Max nTPM: 80.1
Min nTPM: 47.6
Sample A Female 80.1
Sample B Female 66.0
Sample C Male 56.2
Sample D Male 47.6
Entorhinal cortex
nTPM: 48.6
Samples: 4

Max nTPM: 54.4
Min nTPM: 38.2
Sample A Female 54.4
Sample B Female 53.1
Sample C Male 48.8
Sample D Male 38.2
Ventral hippocampus
nTPM: 58.8
Samples: 4

Max nTPM: 72.7
Min nTPM: 39.7
Sample A Female 56.2
Sample B Female 39.7
Sample C Male 66.5
Sample D Male 72.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 84.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 84.4
Samples: 4

Max nTPM: 89.9
Min nTPM: 80.7
Sample A Male 80.7
Sample B Male 83.9
Sample C Female 82.9
Sample D Female 89.9
Hippocampal formation
nTPM: 83.1
Samples: 4

Max nTPM: 87.5
Min nTPM: 75.1
Sample A Male 84.3
Sample B Male 75.1
Sample C Female 87.5
Sample D Female 85.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.6
545095 Antisense, RP_040825_02_C07, Mouse strain C57BL/6J (56 days, male) 4.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo