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  • TISSUE

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  • PEF1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:56.6 nTPM
HPA Brain:57.1 nTPM
GTEx:56.6 nTPM
FANTOM5:25.5 Scaled Tags Per Million
Pig:72.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 50.2
1981 Female, age 72, midline 56.8
2565 Male, age 75, midline 53.6
2194 Female, age 79, both hemispheres 51.1
2816 Male, age 47, midline 45.8
2048 Male, age 55, midline 43.7
Cervical spinal cord, dorsal horn
nTPM: 56.2
2173 Female, age 72, unknown 69.5
2296 Male, age 66, both hemispheres 62.6
2069 Male, age 47, both hemispheres 59.0
2297 Male, age 75, both hemispheres 57.3
1877 Male, age 55, unknown 46.1
2721 Male, age 90, both hemispheres 42.5
Cervical spinal cord, ventral horn
nTPM: 57.1
2480 Male, age 75, both hemispheres 63.3
2809 Male, age 90, both hemispheres 60.8
2068 Male, age 55, unknown 57.5
2098 Female, age 72, unknown 57.5
2295 Male, age 66, both hemispheres 53.6
2820 Female, age 79, both hemispheres 49.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 56.6
Samples: 204

Max nTPM: 103.5
Min nTPM: 38.6
Std nTPM: 9.6
Median nTPM: 55.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 103.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 91.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 82.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 80.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 80.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 80.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 78.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 74.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 74.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 73.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 73.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 71.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 69.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 69.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 69.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 69.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 69.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 68.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 68.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 68.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 68.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 67.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 67.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 67.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 67.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 66.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 66.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 66.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 66.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 66.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 66.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 66.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 65.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 65.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 65.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 65.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 65.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 65.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 65.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 65.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 65.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 64.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 64.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 64.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 63.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 63.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 63.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 63.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 63.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 62.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 62.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 62.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 61.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 61.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 61.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 61.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 61.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 61.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 60.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 60.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 60.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 60.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 60.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 60.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 60.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 60.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 59.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 59.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 59.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 59.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 59.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 59.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 58.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 58.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 58.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 58.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 58.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 58.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 58.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 58.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 58.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 57.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 57.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 57.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 57.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 57.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 57.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 57.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 56.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 56.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 56.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 56.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 56.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 56.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 56.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 56.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 56.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 56.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 56.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 55.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 55.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 55.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 55.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 55.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 55.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 54.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 54.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 54.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 54.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 54.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 54.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 54.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 54.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 54.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 54.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 53.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 53.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 53.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 53.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 53.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 53.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 53.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 53.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 53.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 53.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 53.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 52.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 52.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 52.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 52.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 52.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 52.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 52.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 52.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 52.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 51.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 51.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 51.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 51.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 51.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 51.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 51.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 51.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 51.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 51.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 50.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 50.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 50.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 50.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 50.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 50.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 50.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 49.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 49.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 49.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 49.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 49.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 49.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 49.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 49.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 48.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 48.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 48.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 48.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 48.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 48.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 48.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 48.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 47.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 47.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 47.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 47.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 47.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 47.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 47.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 47.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 46.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 46.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 46.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 46.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 46.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 46.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 45.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 45.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 45.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 45.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 44.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 44.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 44.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 44.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 44.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 44.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 44.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 43.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 43.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 42.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 42.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 41.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 40.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 40.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 40.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 40.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 38.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 38.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 25.5
FF:10159-103A6 76 years, female 27.9
FF:10181-103D1 60 years, female 23.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 66.3
Samples: 4

Max nTPM: 73.5
Min nTPM: 57.4
Sample A Female 69.5
Sample B Female 57.4
Sample C Male 73.5
Sample D Male 64.8
Ventral spinal cord
nTPM: 72.3
Samples: 4

Max nTPM: 75.5
Min nTPM: 66.3
Sample A Female 73.7
Sample B Female 73.6
Sample C Male 75.5
Sample D Male 66.3

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