BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:956.9 nTPM
HPA Brain:949.9 nTPM
GTEx:956.9 nTPM
FANTOM5:980.4 Scaled Tags Per Million
Macaque:594.3 nTPM
Mouse:389.7 nTPM
Rat:309.7 nTPM
Pig:877.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 949.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 729.8
2586 Male, age 75, left hemisphere 984.7
2666 Male, age 74, left hemisphere 939.4
1870 Female, age 42, unknown 839.3
2828 Female, age 72, unknown 767.8
2411 Female, age 72, unknown 714.3
1830 Male, age 51, unknown 703.1
1833 Male, age 53, unknown 701.0
1827 Male, age 72, unknown 646.2
2219 Male, age 76, both hemispheres 526.5
2019 Male, age 18, unknown 475.8
Dorsal raphe nucleus
nTPM: 774.5
2750 Male, age 76, both hemispheres 904.2
2047 Male, age 72, unknown 893.8
1828 Male, age 53, unknown 709.0
2016 Female, age 72, unknown 705.2
2298 Female, age 72, unknown 660.4
Inferior colliculus
nTPM: 539.5
2849 Male, age 72, unknown 618.7
1890 Male, age 53, unknown 558.9
1848 Female, age 42, unknown 555.5
2097 Female, age 72, unknown 425.1
Median raphe nucleus
nTPM: 949.9
2220 Male, age 76, midline 949.9
Periaquaductal grey, anterior
nTPM: 660.7
1947 Male, age 18, unknown 685.5
1795 Male, age 51, unknown 668.9
2502 Female, age 75, unknown 627.8
Periaquaductal grey, dorsal
nTPM: 641.4
2850 Male, age 76, both hemispheres 731.7
1840 Male, age 53, unknown 703.4
2464 Female, age 72, unknown 585.6
1831 Male, age 72, unknown 545.0
Periaquaductal grey, lateral
nTPM: 604.3
2053 Male, age 18, unknown 726.2
2140 Male, age 76, both hemispheres 615.0
2272 Male, age 74, both hemispheres 471.7
Pretectal area
nTPM: 545.6
2825 Male, age 18, unknown 755.9
2407 Male, age 75, both hemispheres 618.5
1815 Male, age 53, unknown 584.7
2224 Female, age 72, unknown 582.2
2667 Female, age 75, unknown 581.9
1817 Female, age 42, unknown 531.3
1816 Male, age 51, unknown 528.8
1944 Female, age 72, unknown 487.6
2316 Male, age 76, right hemisphere 449.0
2007 Male, age 72, unknown 441.9
2273 Male, age 74, both hemispheres 440.0
Red nucleus
nTPM: 754.9
2769 Male, age 72, unknown 846.5
1865 Male, age 51, unknown 824.5
1821 Female, age 72, unknown 822.2
1904 Male, age 53, unknown 815.0
2227 Male, age 72, unknown 814.5
2588 Male, age 74, left hemisphere 805.8
2584 Male, age 75, left hemisphere 795.4
1954 Female, age 42, unknown 791.9
2725 Female, age 75, unknown 730.7
2503 Female, age 72, unknown 686.0
2823 Male, age 76, right hemisphere 659.6
2785 Male, age 18, unknown 466.7
Substantia nigra
nTPM: 751.2
2699 Male, age 18, unknown 1022.8
1916 Female, age 42, unknown 926.4
2583 Male, age 75, right hemisphere 830.8
1851 Male, age 51, unknown 808.5
2665 Male, age 74, both hemispheres 763.8
2241 Male, age 72, unknown 739.2
2590 Female, age 75, unknown 627.3
1889 Female, age 72, unknown 616.2
1941 Male, age 53, unknown 607.1
2409 Female, age 72, unknown 569.5
Superior colliculus
nTPM: 596.3
2664 Male, age 75, both hemispheres 799.8
2668 Female, age 75, unknown 687.3
2587 Male, age 74, left hemisphere 673.5
1913 Female, age 42, unknown 618.1
1796 Male, age 53, unknown 597.6
2261 Male, age 18, unknown 571.3
1839 Male, age 51, unknown 566.2
1995 Male, age 72, unknown 552.5
2087 Female, age 72, unknown 475.6
1895 Male, age 76, right hemisphere 420.9
Ventral tegmental area
nTPM: 836.4
2223 Female, age 72, unknown 1295.0
2021 Male, age 53, unknown 784.9
1915 Female, age 42, unknown 756.1
2410 Female, age 72, unknown 750.0
2218 Male, age 76, both hemispheres 718.6
1942 Male, age 51, unknown 713.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 956.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 956.9
Samples: 183

Max nTPM: 1893.8
Min nTPM: 255.7
Std nTPM: 272.6
Median nTPM: 933.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1893.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1890.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1697.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1637.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1608.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1576.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1518.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1491.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1448.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1430.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1426.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 980.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 980.4
FF:10158-103A5 76 years, female 980.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 594.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 594.3
Samples: 1

Max nTPM: 594.3
Min nTPM: 594.3
Sample A 594.3
Midbrain
nTPM: 426.3
Samples: 1

Max nTPM: 426.3
Min nTPM: 426.3
Sample A 426.3
Superior colliculi
nTPM: 341.8
Samples: 1

Max nTPM: 341.8
Min nTPM: 341.8
Sample A 341.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 877.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 877.7
Samples: 3

Max nTPM: 1116.8
Min nTPM: 625.0
Sample A Female 1116.8
Sample B Female 625.0
Sample C Male 891.2
Midbrain
nTPM: 631.0
Samples: 3

Max nTPM: 876.6
Min nTPM: 498.9
Sample B Female 876.6
Sample C Male 517.4
Sample D Male 498.9
Periaqueductal gray
nTPM: 579.1
Samples: 3

Max nTPM: 650.5
Min nTPM: 537.0
Sample B Female 650.5
Sample C Male 537.0
Sample D Male 549.7
Superior colliculi
nTPM: 674.1
Samples: 4

Max nTPM: 809.0
Min nTPM: 406.6
Sample A Female 809.0
Sample B Female 406.6
Sample C Male 702.1
Sample D Male 778.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 389.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 389.7
Samples: 4

Max nTPM: 397.9
Min nTPM: 378.7
Sample A 397.9
Sample B 387.4
Sample C 378.7
Sample D 394.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 309.7
Rat sample Sample description nTPM
Midbrain
nTPM: 309.7
Samples: 4

Max nTPM: 332.1
Min nTPM: 295.7
Sample A 298.6
Sample A 332.1
Sample A 312.4
Sample A 295.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo