MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.0 nTPM
HPA Brain:63.8 nTPM
GTEx:76.0 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:114.5 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.8
1827 Male, age 72, unknown 52.5
2666 Male, age 74, left hemisphere 49.8
1870 Female, age 42, unknown 49.5
1833 Male, age 53, unknown 46.3
2411 Female, age 72, unknown 46.0
2219 Male, age 76, both hemispheres 45.2
1830 Male, age 51, unknown 42.6
2019 Male, age 18, unknown 42.5
2828 Female, age 72, unknown 39.3
2586 Male, age 75, left hemisphere 33.7
Dorsal raphe nucleus
nTPM: 52.2
2298 Female, age 72, unknown 59.4
1828 Male, age 53, unknown 52.3
2047 Male, age 72, unknown 51.5
2016 Female, age 72, unknown 49.7
2750 Male, age 76, both hemispheres 48.0
Inferior colliculus
nTPM: 53.9
2849 Male, age 72, unknown 59.4
2097 Female, age 72, unknown 57.5
1848 Female, age 42, unknown 51.9
1890 Male, age 53, unknown 47.0
Median raphe nucleus
nTPM: 63.8
2220 Male, age 76, midline 63.8
Periaquaductal grey, anterior
nTPM: 49.0
1947 Male, age 18, unknown 56.2
1795 Male, age 51, unknown 49.6
2502 Female, age 75, unknown 41.3
Periaquaductal grey, dorsal
nTPM: 53.9
2850 Male, age 76, both hemispheres 61.7
1840 Male, age 53, unknown 54.2
1831 Male, age 72, unknown 50.9
2464 Female, age 72, unknown 48.8
Periaquaductal grey, lateral
nTPM: 53.9
2272 Male, age 74, both hemispheres 58.8
2140 Male, age 76, both hemispheres 53.8
2053 Male, age 18, unknown 49.0
Pretectal area
nTPM: 52.7
2273 Male, age 74, both hemispheres 60.5
1816 Male, age 51, unknown 58.5
1944 Female, age 72, unknown 58.0
2224 Female, age 72, unknown 57.9
2667 Female, age 75, unknown 53.5
1817 Female, age 42, unknown 52.2
2825 Male, age 18, unknown 51.8
2007 Male, age 72, unknown 50.8
1815 Male, age 53, unknown 48.0
2407 Male, age 75, both hemispheres 44.7
2316 Male, age 76, right hemisphere 43.6
Red nucleus
nTPM: 41.8
2725 Female, age 75, unknown 48.0
1821 Female, age 72, unknown 46.4
1954 Female, age 42, unknown 44.2
2584 Male, age 75, left hemisphere 43.4
2588 Male, age 74, left hemisphere 42.0
2823 Male, age 76, right hemisphere 42.0
2503 Female, age 72, unknown 41.9
2785 Male, age 18, unknown 41.5
2227 Male, age 72, unknown 41.2
2769 Male, age 72, unknown 39.3
1865 Male, age 51, unknown 36.2
1904 Male, age 53, unknown 35.7
Substantia nigra
nTPM: 55.4
1941 Male, age 53, unknown 79.5
2241 Male, age 72, unknown 68.6
1916 Female, age 42, unknown 63.7
1889 Female, age 72, unknown 52.7
2699 Male, age 18, unknown 51.5
1851 Male, age 51, unknown 51.1
2590 Female, age 75, unknown 49.3
2665 Male, age 74, both hemispheres 47.1
2409 Female, age 72, unknown 46.7
2583 Male, age 75, right hemisphere 43.8
Superior colliculus
nTPM: 47.6
1839 Male, age 51, unknown 53.7
1895 Male, age 76, right hemisphere 53.5
2668 Female, age 75, unknown 52.1
2087 Female, age 72, unknown 51.9
2587 Male, age 74, left hemisphere 50.5
2261 Male, age 18, unknown 50.2
1796 Male, age 53, unknown 47.8
2664 Male, age 75, both hemispheres 44.5
1913 Female, age 42, unknown 38.2
1995 Male, age 72, unknown 33.6
Ventral tegmental area
nTPM: 49.2
1915 Female, age 42, unknown 53.8
2218 Male, age 76, both hemispheres 53.7
2223 Female, age 72, unknown 50.0
1942 Male, age 51, unknown 48.4
2021 Male, age 53, unknown 45.6
2410 Female, age 72, unknown 43.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 76.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.0
Samples: 183

Max nTPM: 236.6
Min nTPM: 41.2
Std nTPM: 22.0
Median nTPM: 71.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 236.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 152.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 146.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 127.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 125.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 121.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 118.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 116.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 114.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 113.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 110.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.1
FF:10158-103A5 76 years, female 55.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.5
Samples: 4

Max nTPM: 23.2
Min nTPM: 11.3
Sample A Female 23.2
Sample B Female 15.1
Sample C Male 20.4
Sample D Male 11.3
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 27.0
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 18.2
Sample C Male 27.0
Sample D Male 26.9
Periaqueductal gray
nTPM: 18.7
Samples: 3

Max nTPM: 21.8
Min nTPM: 17.0
Sample B Female 17.0
Sample C Male 21.8
Sample D Male 17.3
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 16.7
Sample A Female 25.3
Sample B Female 16.7
Sample C Male 27.7
Sample D Male 20.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 114.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.4
Samples: 4

Max nTPM: 117.9
Min nTPM: 111.1
Sample A Male 111.1
Sample B Male 116.9
Sample C Female 117.9
Sample D Female 111.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
76081944 Antisense, RP_060626_01_B04, Mouse strain C57BL/6J (56 days, male) 10.7

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