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  • H3-3A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:394.8 nTPM
HPA Brain:236.0 nTPM
GTEx:394.8 nTPM
FANTOM5:27.9 Scaled Tags Per Million
Pig:241.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 206.4
1981 Female, age 72, midline 284.6
2048 Male, age 55, midline 243.1
2816 Male, age 47, midline 186.2
2194 Female, age 79, both hemispheres 164.9
2565 Male, age 75, midline 153.1
Cervical spinal cord, dorsal horn
nTPM: 236.0
2173 Female, age 72, unknown 304.2
2296 Male, age 66, both hemispheres 298.8
2069 Male, age 47, both hemispheres 257.4
1877 Male, age 55, unknown 237.5
2297 Male, age 75, both hemispheres 168.2
2721 Male, age 90, both hemispheres 149.8
Cervical spinal cord, ventral horn
nTPM: 214.3
2098 Female, age 72, unknown 333.8
2809 Male, age 90, both hemispheres 233.8
2480 Male, age 75, both hemispheres 209.1
2295 Male, age 66, both hemispheres 182.1
2068 Male, age 55, unknown 181.6
2820 Female, age 79, both hemispheres 145.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

394.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 394.8
Samples: 204

Max nTPM: 649.3
Min nTPM: 189.8
Std nTPM: 82.9
Median nTPM: 385.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 649.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 608.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 594.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 584.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 581.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 579.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 575.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 573.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 568.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 562.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 550.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 543.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 541.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 539.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 531.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 530.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 517.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 514.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 508.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 507.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 505.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 504.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 504.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 503.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 502.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 498.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 496.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 495.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 495.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 493.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 490.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 489.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 485.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 485.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 479.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 474.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 472.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 469.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 468.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 464.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 456.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 456.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 454.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 454.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 452.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 451.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 449.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 449.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 447.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 446.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 446.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 442.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 440.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 437.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 437.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 436.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 434.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 434.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 433.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 433.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 432.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 431.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 431.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 430.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 429.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 427.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 423.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 421.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 419.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 419.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 418.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 417.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 416.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 414.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 410.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 408.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 408.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 408.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 407.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 407.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 407.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 406.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 405.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 404.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 403.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 403.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 401.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 399.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 399.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 398.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 397.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 396.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 394.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 394.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 394.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 394.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 391.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 391.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 391.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 391.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 390.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 387.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 383.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 382.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 381.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 380.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 379.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 378.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 376.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 375.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 375.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 373.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 373.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 371.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 371.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 370.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 369.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 368.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 368.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 367.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 367.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 367.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 367.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 365.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 364.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 361.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 359.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 358.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 357.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 357.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 356.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 353.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 352.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 352.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 351.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 351.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 351.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 351.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 351.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 350.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 349.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 349.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 349.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 345.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 343.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 343.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 340.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 338.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 337.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 337.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 335.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 334.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 333.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 332.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 332.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 332.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 330.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 330.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 330.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 329.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 329.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 327.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 327.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 325.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 325.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 324.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 323.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 323.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 322.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 319.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 318.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 318.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 316.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 315.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 312.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 311.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 311.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 311.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 310.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 309.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 306.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 305.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 302.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 300.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 297.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 293.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 292.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 291.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 288.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 285.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 280.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 277.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 275.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 275.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 274.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 271.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 264.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 253.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 253.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 249.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 245.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 237.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 215.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 189.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 27.9
FF:10181-103D1 60 years, female 32.2
FF:10159-103A6 76 years, female 23.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 241.2
Samples: 4

Max nTPM: 341.3
Min nTPM: 175.2
Sample A Female 175.2
Sample B Female 250.9
Sample C Male 341.3
Sample D Male 197.5
Ventral spinal cord
nTPM: 192.1
Samples: 4

Max nTPM: 213.6
Min nTPM: 172.6
Sample A Female 172.6
Sample B Female 193.1
Sample C Male 213.6
Sample D Male 189.0

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