MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:300.9 nTPM
HPA Brain:177.0 nTPM
GTEx:300.9 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:182.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 177.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.8
1870 Female, age 42, unknown 197.7
2411 Female, age 72, unknown 174.1
1833 Male, age 53, unknown 162.6
2019 Male, age 18, unknown 158.8
1830 Male, age 51, unknown 155.0
2219 Male, age 76, both hemispheres 154.4
2828 Female, age 72, unknown 153.9
1827 Male, age 72, unknown 146.0
2666 Male, age 74, left hemisphere 94.9
2586 Male, age 75, left hemisphere 80.9
Dorsal raphe nucleus
nTPM: 177.0
2298 Female, age 72, unknown 214.0
2016 Female, age 72, unknown 194.7
2750 Male, age 76, both hemispheres 187.7
1828 Male, age 53, unknown 158.9
2047 Male, age 72, unknown 129.4
Inferior colliculus
nTPM: 162.9
2097 Female, age 72, unknown 197.3
1890 Male, age 53, unknown 163.5
1848 Female, age 42, unknown 160.5
2849 Male, age 72, unknown 130.3
Median raphe nucleus
nTPM: 132.5
2220 Male, age 76, midline 132.5
Periaquaductal grey, anterior
nTPM: 158.2
2502 Female, age 75, unknown 202.8
1795 Male, age 51, unknown 137.6
1947 Male, age 18, unknown 134.2
Periaquaductal grey, dorsal
nTPM: 168.4
2850 Male, age 76, both hemispheres 174.5
1831 Male, age 72, unknown 167.4
1840 Male, age 53, unknown 166.3
2464 Female, age 72, unknown 165.5
Periaquaductal grey, lateral
nTPM: 171.5
2272 Male, age 74, both hemispheres 189.7
2053 Male, age 18, unknown 166.1
2140 Male, age 76, both hemispheres 158.6
Pretectal area
nTPM: 167.2
2273 Male, age 74, both hemispheres 220.1
2224 Female, age 72, unknown 202.1
2316 Male, age 76, right hemisphere 191.6
2667 Female, age 75, unknown 177.7
1815 Male, age 53, unknown 162.0
1944 Female, age 72, unknown 156.2
1817 Female, age 42, unknown 154.8
2825 Male, age 18, unknown 152.0
1816 Male, age 51, unknown 146.3
2007 Male, age 72, unknown 144.8
2407 Male, age 75, both hemispheres 131.2
Red nucleus
nTPM: 173.4
1904 Male, age 53, unknown 205.5
2227 Male, age 72, unknown 202.1
2503 Female, age 72, unknown 198.5
1821 Female, age 72, unknown 197.2
1954 Female, age 42, unknown 193.8
2823 Male, age 76, right hemisphere 192.4
2769 Male, age 72, unknown 190.8
1865 Male, age 51, unknown 185.9
2785 Male, age 18, unknown 178.3
2725 Female, age 75, unknown 135.3
2584 Male, age 75, left hemisphere 101.2
2588 Male, age 74, left hemisphere 100.4
Substantia nigra
nTPM: 139.9
1889 Female, age 72, unknown 161.7
1851 Male, age 51, unknown 158.1
2699 Male, age 18, unknown 157.2
2409 Female, age 72, unknown 153.0
2241 Male, age 72, unknown 142.5
2590 Female, age 75, unknown 140.9
1916 Female, age 42, unknown 133.3
2665 Male, age 74, both hemispheres 124.6
1941 Male, age 53, unknown 119.1
2583 Male, age 75, right hemisphere 108.6
Superior colliculus
nTPM: 162.3
1995 Male, age 72, unknown 214.8
1913 Female, age 42, unknown 213.8
2587 Male, age 74, left hemisphere 175.1
1895 Male, age 76, right hemisphere 165.2
2261 Male, age 18, unknown 155.6
1839 Male, age 51, unknown 153.0
2087 Female, age 72, unknown 151.9
1796 Male, age 53, unknown 148.3
2668 Female, age 75, unknown 139.2
2664 Male, age 75, both hemispheres 106.3
Ventral tegmental area
nTPM: 153.5
2223 Female, age 72, unknown 160.3
2218 Male, age 76, both hemispheres 158.9
2021 Male, age 53, unknown 155.1
2410 Female, age 72, unknown 150.2
1942 Male, age 51, unknown 150.0
1915 Female, age 42, unknown 146.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 300.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 300.9
Samples: 183

Max nTPM: 635.9
Min nTPM: 123.5
Std nTPM: 86.5
Median nTPM: 299.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 635.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 609.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 508.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 504.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 495.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 481.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 477.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 469.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 452.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 449.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 444.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.8
FF:10158-103A5 76 years, female 34.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 182.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 177.5
Samples: 4

Max nTPM: 207.8
Min nTPM: 152.2
Sample A Female 207.8
Sample B Female 183.1
Sample C Male 152.2
Sample D Male 166.9
Midbrain
nTPM: 179.3
Samples: 4

Max nTPM: 277.4
Min nTPM: 125.1
Sample A Female 277.4
Sample B Female 189.6
Sample C Male 125.2
Sample D Male 125.1
Periaqueductal gray
nTPM: 157.8
Samples: 3

Max nTPM: 166.3
Min nTPM: 147.8
Sample B Female 159.2
Sample C Male 166.3
Sample D Male 147.8
Superior colliculi
nTPM: 182.3
Samples: 4

Max nTPM: 220.1
Min nTPM: 137.3
Sample A Female 220.1
Sample B Female 218.1
Sample C Male 137.3
Sample D Male 153.5

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